Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01412 ATGGAGTGTGAAGTTGAATTACAAGGGGGAGATCTGCATCCAGGGGTGGTAACTGAACCAAACCCTGTTGGTTTTGGCACCATGGAAGATGATGCACACACTTTGGCGGTTGCTGAGAGAGAGATGTGGCTGAATAGTGACCAAGACGAGTTCCTAGGTGTCAATGATGCTTCCATGTTCTACGCTGATTTCCCTCCTCTCCCTGATTTCCCATGCATGTCATCATCATCGTCTTCATCTTCAGCACCACCACTTCCTGTGAAGACCATGACATGTTCCACCACAACCACAACAACCACCACCACCACCACTTCCTCTTCTTCCTCTTCCTCTTCTTGGGCCATGTTGAAGTCAGATGCTGAGGAAGATGCAGAGAAAAACCATTGCAACCGCTACATGCATGACCAACTTGATGCTACTCTGTCTTCCACTGCTTCCATGGAGATTTCTCAGCAGCAAAACCCTGATCCTGGCCTCGGTGGCACTGTTGGAGAGTGCATGGATGATGTTATGGACACTTTTGGATACATGGAGTTGTTAGAGGCCAATGATTTCTTCGACCCTGCCTCTATCTTCCAGAATGAGGATAATGAAAACCCTTTAGTGGAATTTGGCACACTGGAGGAGCATGTGCCGCTAGTTGAGGAGCAACATGCAATGGTGCATCAGCAAGGGAAAGCAGAAGAGGAAGATCATCAGGTTCCTGTGTGTGAAGAGATCCAAGGAGAGGAAGAAGGTGGTGATGTTGGTGGAATAGATGATGAGATGAGTAATGTGTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGCGTTTCTGCTAATGACTTGAGGAGTGTGAAGCTCAAGAAGGCGACGATCGAAAGCGCGGCGAGGCGGTTAGGGGGAGGAAAAGAAGCCATGAAGCAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGCAAGGAGAATAATGGTAGTTGCATTATTAACAGTGCACTTCAGGCACAGTTTCAGGATCCTAGTGGCCAGAACAACCAGAGCACACAAACTGGTTCGTTTGCACCTGAATCAAACAGTTGTTTCAACAACCAGACACCTTGGTTGAGTCCTCAACCTTTTGGGACAGATCAGGCTCCTCTCATGGTGCCTCCACAGCAATTTCCACAACCCATGGTTGGGTATGTGGGTGACCCTTACTCTAGTGGTGCTGCTTCAAATAACATCACAGCCACTCATAACCATAACAACAACAACAACCCTTATCAACCTGGTGCAGAACAATATCACATGTTGGAGTCTGCACATTCATGGCCTCATTCACAGTTCAATGTTGCTAATTCTCACTATAGCCAGTCCTTTGGGGACAATGGTGTTTTCCCTCATGGGGGTTTTGGCGGCTATGGCAATAACCAATACCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTTGATGAGGTTGGGACCCTCGGCGACCAAGGAAGCGAGGAAGAAGAGAATGGCAAGGCAGAGAAGGTTCTTGTCTCATCATAGGCATCATAATGGTAATCACCACCAGAATCAAGCATCTGACCCTCATGCAAGATTGGGAGGTGATAATTGCACCACTGGTTTGGCTGCACCTCATCATGCAAATTCTGCAGCCAATTGGATGTACTGGCAGGCTATGGCGGGTGGCGCAGCCGGTCCTTTGGCCCCGGTGGTTCCGGCCGAGCCACCGGCCGGACAACCGGTGGTGGACCGGCCGGCCATGCAGACACAGAATTGTCATCAGAGTCGAGTTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTGCAGAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGGTACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGACTTTGTGAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATACTCAGATGTGAAGTGTGGCAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGACTAATGCATCAACTACAGCTGGAACTGCTGCTAATAATGGCACGCCATCGTCACCGAAACAAAAAGCTGAAAAAATTAGTAAATTAATATAA 2298 0.4752 MECEVELQGGDLHPGVVTEPNPVGFGTMEDDAHTLAVAEREMWLNSDQDEFLGVNDASMFYADFPPLPDFPCMSSSSSSSSAPPLPVKTMTCSTTTTTTTTTTTSSSSSSSSWAMLKSDAEEDAEKNHCNRYMHDQLDATLSSTASMEISQQQNPDPGLGGTVGECMDDVMDTFGYMELLEANDFFDPASIFQNEDNENPLVEFGTLEEHVPLVEEQHAMVHQQGKAEEEDHQVPVCEEIQGEEEGGDVGGIDDEMSNVFLEWLKSNKDSVSANDLRSVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNGSCIINSALQAQFQDPSGQNNQSTQTGSFAPESNSCFNNQTPWLSPQPFGTDQAPLMVPPQQFPQPMVGYVGDPYSSGAASNNITATHNHNNNNNPYQPGAEQYHMLESAHSWPHSQFNVANSHYSQSFGDNGVFPHGGFGGYGNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRHHNGNHHQNQASDPHARLGGDNCTTGLAAPHHANSAANWMYWQAMAGGAAGPLAPVVPAEPPAGQPVVDRPAMQTQNCHQSRVASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQHGTNASTTAGTAANNGTPSSPKQKAEKISKLI 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01412 765 MobiDBLite consensus disorder prediction 75 112 - -
Pumo5g01412 765 Pfam B3 DNA binding domain 614 710 IPR003340 GO:0003677
Pumo5g01412 765 MobiDBLite consensus disorder prediction 730 757 - -
Pumo5g01412 765 MobiDBLite consensus disorder prediction 717 765 - -
Pumo5g01412 765 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 263 738 IPR044800 GO:0003700
Pumo5g01412 765 MobiDBLite consensus disorder prediction 339 362 - -
Pumo5g01412 765 Gene3D - 609 728 IPR015300 -
Pumo5g01412 765 FunFam B3 domain-containing transcription factor FUS3 609 724 - -
Pumo5g01412 765 CDD BfiI_C_EcoRII_N_B3 611 712 - -
Pumo5g01412 765 SMART B3_2 613 715 IPR003340 GO:0003677
Pumo5g01412 765 ProSiteProfiles B3 DNA-binding domain profile. 613 715 IPR003340 GO:0003677
Pumo5g01412 765 SUPERFAMILY DNA-binding pseudobarrel domain 612 708 IPR015300 -
Pumo5g01412 765 MobiDBLite consensus disorder prediction 512 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01412 Pumo-Chr5 37002117 37005166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01412 40 746 B3 DNA Binding Superfamily AT3G24650 46.850 6.01e-170 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo5g01412 B3 3.9e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01412 K09287 - gmx:100795226 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01412 5 37002117 37005166 Pumo5g01412 5 37002117 37005166 ECH