Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01411 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAACCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCACCATCACCACCTTCTCCATGTTCTTCTCTTTACACTTCTTGTTCCTCTTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCACAGCCCCTCCAATGTTCCTTCAGCTTTTTCTAGTTGGAACCCTTTGGACTCCAATCCTTGCAATTGGTCTTACATCAAATGCTCTTCAGCAAGCTTTGTCACTGAGATAACCATTCAAAATGTTGAGTTAGCACTTCCCTTCCCTTCAAAAATCTCTTCCCTTCCCTTCCTTCAAAAGTTGGTCATTTCTGGGGCCAACCTCACTGGGGCTATCTCACCTGATATTGGGAACTGCCCTGAGCTTATAGTCCTTGACCTTAGCTCAAATAGTCTTGTGGGGGGCATTCCTTCAAGTATTGGGAGGCTCAAAAACCTCCAAAGCTTGAGCTTGAACTCTAACCATCTCACTGGGCCAATCCCAAGTGAGCTGGGTGATTGTGTCAATCTCAAGACCCTTGACATCTTTGATAACAACCTTAGTGGGGATCTTCCTTTGGAACTAGGAAAGCTTTCAAATCTGGAGATTATAAGAGCAGGAGGGAACAGTGGCATTGTGGGGAAGATTCCAGATGAGCTGGGAGATTGCAGGAATTTGTCAGTGTTGGGTCTTGCTGACACAAAAATTTCTGGTTCACTGCCTGCTTCACTGGGTAAGTTAAGTATGCTTCAGACCTTGTCTATTTATAGTACTTTGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTTGAGAACTTGTTTTTGTATGAGAATGGTCTCTCTGGCTCCCTGCCAAGAGAGATTGGTAAGCTTCAAAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTGATTGGGGACATCCCTGAGGAAATTGGAAACTGCAGAAGCTTGAAGATTCTTGATGTCTCCTTGAACTCTTTCTCTGGTGGAATACCTCAAAGTTTGGGGCAGCTCTCAAATCTTGAGGAGCTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCAAAAGCTCTCTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACAAATCAGCTATCAGGTGCAATTCCACCTGAGCTTGGAAGCTTGACAAAGCTAACAGTGTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAACATTGGGAGGCTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCAGTGATAGCTTACCACCAGGTCTGTTTAAACTTCAAAATTTAACAAAGCTTTTGCTAATCTCTAATGATATTTCTGGCCCCATCCCTCCTGAGATTGGCAACTGCAGCTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCAAAAGAAATTGGTTTCCTCAATAGCCTCAATTTCCTTGATCTGTCTGAGAATCACCTTACCGGGTCAGTACCACTTGAGATTGGAAACTGTAAAGAATTGCAAATGCTGAATCTAAGTAATAACTCCCTTTCTGGTGCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTATTGGATGTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTCTCTGGGCCAATTCCCTCCTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAATTTCTCAGGGAGCATCCCACCGGAACTGCTTCAAATTGAATCCCTTGATATTTCTCTAAATTTGAGTCATAATGCATTATCTGGAGTGATCCCACCAGAGATTTCTTTTTTGAACAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGTGACTTGATGGCATTTTCGGGGCTCGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGTTATCTACCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAATGGTGCAATGACAAAAATGCTGAATAGCACTAATTCTAAGAGGTCAGAGATAATCAAACTGTCCATTGGATTGCTCAGTGCCTTGGTAGTTGCAATGGCAATCTTTGGAGTTGTTACGGTCTTTCGAGCAAGGAAAATGATTCAAGCAGACAATGATTCTGAGATGGGAGGGGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAATTTCTCTGTGGAGCAAGTGTTAAAGTGTTTGGTGGAATCCAATGTGATTGGAAAGGGGTGTTCAGGGATTGTTTATCGCGCCGAAATGGAAAAGGGGGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAATGGCTGCAAGATATGATAGTCAAAGTGACAAGTTAGCAGTTAATGGAGGGGTCCGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGGCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAACACCAGACTGCTTATGTATGATTATATGCCAAATGGGAGTCTAGGAAGTCTACTTCATGAACGAAGTGGCAATTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCTCAAGGTGTGGCCTATTTGCACCATGATTGTGCTCCTCCCATTGTTCACAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCACGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGATACATGATGAAGATAACAGAAAAAAGTGATGTTTATAGCTATGGTATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGCTGGATGAAAGCTTGCGAGCTCGGCCGGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTACTGTGTGTGAATCCAAGCCCAGATGACAGACCAACAATGAAAGATGTAGTAGCAATGATGAAGGAAATTAGGCAGGAGAGGGAGGAATGTGTGAAAGTTGACATGCTTCTTGATCCATCTTCTGCAAATGATCAGCAAGAAAGAAATCATCCCATTGAAGAACCAATGTCAATGATAAGCACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCCGTCGCCCTCAAACACCAAAGTAA 3453 0.4304 MLVVEFLRELPMSMPRQTLSNQNHNQMSRQAFITNHHHHHHHLLHVLLFTLLVPLSFAANDEVSALVSWMHSPSNVPSAFSSWNPLDSNPCNWSYIKCSSASFVTEITIQNVELALPFPSKISSLPFLQKLVISGANLTGAISPDIGNCPELIVLDLSSNSLVGGIPSSIGRLKNLQSLSLNSNHLTGPIPSELGDCVNLKTLDIFDNNLSGDLPLELGKLSNLEIIRAGGNSGIVGKIPDELGDCRNLSVLGLADTKISGSLPASLGKLSMLQTLSIYSTLLSGEIPPEIGNCSELENLFLYENGLSGSLPREIGKLQKLEKMLLWQNNLIGDIPEEIGNCRSLKILDVSLNSFSGGIPQSLGQLSNLEELMLSNNNISGSIPKALSNLTNLIQLQLDTNQLSGAIPPELGSLTKLTVFFAWQNKLEGGIPSTLGGCRSLEALDLSYNALSDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVDNRISGEIPKEIGFLNSLNFLDLSENHLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNNFSGSIPPELLQIESLDISLNLSHNALSGVIPPEISFLNKLSVLDLSHNNLEGDLMAFSGLENLVSLNISYNKFTGYLPDSKLFHQLSATDLAGNQGLCPNGHDSCFVSNGAMTKMLNSTNSKRSEIIKLSIGLLSALVVAMAIFGVVTVFRARKMIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMEKGDVIAVKRLWPTTMAARYDSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNPSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDPSSANDQQERNHPIEEPMSMISTSSTNLHLHYSPRRPQTPK 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01411 1150 ProSitePatterns Protein kinases ATP-binding region signature. 814 836 IPR017441 GO:0005524
Pumo5g01411 1150 Pfam Leucine Rich repeat 438 453 IPR001611 GO:0005515
Pumo5g01411 1150 Gene3D Phosphorylase Kinase; domain 1 792 898 - -
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 61 169 IPR032675 -
Pumo5g01411 1150 SUPERFAMILY Protein kinase-like (PK-like) 791 1091 IPR011009 -
Pumo5g01411 1150 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 440 727 - -
Pumo5g01411 1150 SUPERFAMILY RNI-like 383 713 - -
Pumo5g01411 1150 Pfam Protein kinase domain 810 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01411 1150 MobiDBLite consensus disorder prediction 1126 1142 - -
Pumo5g01411 1150 SMART serkin_6 808 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01411 1150 PRINTS Leucine-rich repeat signature 513 526 - -
Pumo5g01411 1150 PRINTS Leucine-rich repeat signature 655 668 - -
Pumo5g01411 1150 SUPERFAMILY L domain-like 59 431 - -
Pumo5g01411 1150 ProSiteProfiles Protein kinase domain profile. 808 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01411 1150 Pfam Leucine rich repeat N-terminal domain 59 99 IPR013210 -
Pumo5g01411 1150 ProSiteProfiles Leucine-rich repeat profile. 368 391 IPR001611 GO:0005515
Pumo5g01411 1150 FunFam Predicted protein 216 313 - -
Pumo5g01411 1150 FunFam Receptor-like protein kinase 2 60 215 - -
Pumo5g01411 1150 MobiDBLite consensus disorder prediction 1112 1150 - -
Pumo5g01411 1150 Gene3D Transferase(Phosphotransferase) domain 1 899 1112 - -
Pumo5g01411 1150 SMART LRR_sd22_2 414 446 - -
Pumo5g01411 1150 SMART LRR_sd22_2 366 392 - -
Pumo5g01411 1150 SMART LRR_sd22_2 655 680 - -
Pumo5g01411 1150 SMART LRR_sd22_2 173 196 - -
Pumo5g01411 1150 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 791 898 - -
Pumo5g01411 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 943 955 IPR008271 GO:0004672|GO:0006468
Pumo5g01411 1150 ProSiteProfiles Leucine-rich repeat profile. 657 679 IPR001611 GO:0005515
Pumo5g01411 1150 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 314 422 - -
Pumo5g01411 1150 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 899 1109 - -
Pumo5g01411 1150 Pfam Leucine rich repeat 128 186 IPR001611 GO:0005515
Pumo5g01411 1150 Pfam Leucine rich repeat 343 403 IPR001611 GO:0005515
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 455 550 IPR032675 -
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 551 635 IPR032675 -
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 636 723 IPR032675 -
Pumo5g01411 1150 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 329 1090 - -
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 170 264 IPR032675 -
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 265 359 IPR032675 -
Pumo5g01411 1150 Gene3D Ribonuclease Inhibitor 360 454 IPR032675 -
Pumo5g01411 1150 SMART LRR_typ_2 582 606 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 655 677 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 390 414 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 438 462 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 366 389 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 510 534 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 318 342 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 173 197 IPR003591 -
Pumo5g01411 1150 SMART LRR_typ_2 678 703 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01411 Pumo-Chr5 36977566 36981707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01411 57 1142 Receptor kinase-like Gene Family AT5G56040 47.464 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g01411 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01411 - - gmx:100794698 2096.63