Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01409 ATGGCGTTTCTGAGGCCTTTCTCTCTCTACATTTCCATGTCCTTGTTCTTCTTCCTCCTCTTCTTTTGCTTCTGCAAAGCCAGTAGTACTACCTCCACAAAGTCACTGTCCCCTTCTTCACCCTCCACTACTTCTTCCTCCTCTGATGTTGAACTTCTCTTGGGAAAGATCAAAGCTTCAGTGCAAGGTAACTCTGACAACCTTGTTTTGTCTTCATGGAACTCCTCCATCCCACTTTGTCAGTGGAGAGGCCTCAAATGGGTCTTCTCCAATGGCACTCCTCTCTCATGCACTGACCTGTCCTCTCCACAATGGACCAATCTCACACTCCACAAAGACCCTTCTCTCCACTTGCTCTCTCTTCAGCTCCCTTCTGCAAACCTCTCTGGCTCCCTCCCCAGAGAGCTTGGGGGGTTCCCTATGCTTCAAAGTCTCTACCTTAACATAAACTCATTGGAGGGTACCATCCCTCTTGAGCTTGGCTACAGCTCCTCCCTCTCTGACATTGATTTGAGTGACAATATGCTAAGTGGGGTTCTTCCCCCATCCATTTGGAACTTGTGTGAGAGGCTTGTTTCCCTTAGGCTCCATGGTAATTCCCTATCTGGGTCAGTTTCTGAGCCTGCATTGCCCAACTCATCTTGTAAGAATCTGCAGTTGCTTGATTTGGGTGGCAACAAGTTCTCTGGGAGTTTCCCTGAGTTCATCACAAAGTTTGGTGGGCTAAAGCAGCTTGACTTGGGGAACAACATGTTTATGGGCACAATTCCTCAAGGCCTAGCTGGGCTTAGGCTTGAAAAATTGAATCTTTCCCACAATAACTTTAGTGGGGTCTTGCCTTTCTTTGGAGAATCCAAGTTTGGTGTGGATGCTTTTGAGGGGAATAGCCCTGGCCTGTGTGGGCCACCTTTGGCAAGCTGTGCTAGGACCTCTACACTGAGTTCTGGTGCTGTTGCTGGCATTGTTATTAGTCTGATGACAGGAGCTGTGGTTTTGGCTTCTTTGCTGATAGGGTATATGCAGAACAAGAAGAGGAAGGGGAGTGGGGAGAGTGAGGATGAGTTGAATGATGAAGAGGAAGATGAAGAGAATGGTGGTAATTCTATTGGTGGAGCTGGTGAGGGGAAGCTCATGTTGTTCCAGGGAGGTGAGAATTTGACATTGGATGATGTGTTGAATGCAACTGGGCAAGTTTTGGAGAAGACTTGTTATGGGACAGCTTATAAGGCTAAGCTGGCTGATGGAGGCACCATTGCTTTGAGGTTGTTGAGAGAAGGTAGCTGCAAAGATAAGGCTTCATGCTTGTCTGTTATAAAGCAATTGGGGAAAATTCGCCACGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGAAAGAGAGGGGAGAAGCTCCTTATTTATGACTACCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAAGCTAAAGCTGGAAAACCAGTGCTGAACTGGGCTAGGCGACACAAGATTGCATTGGGCATAGCGAGAGGGCTAGCTTATCTTCATACAGGACTTGAAGTTCCTGTCACTCATGCAAATGTAAGGTCCAAGAATGTGCTTGTGGACGACTTTTTTTGCAGCCAGGCTCACTGA 1614 0.4709 MAFLRPFSLYISMSLFFFLLFFCFCKASSTTSTKSLSPSSPSTTSSSSDVELLLGKIKASVQGNSDNLVLSSWNSSIPLCQWRGLKWVFSNGTPLSCTDLSSPQWTNLTLHKDPSLHLLSLQLPSANLSGSLPRELGGFPMLQSLYLNINSLEGTIPLELGYSSSLSDIDLSDNMLSGVLPPSIWNLCERLVSLRLHGNSLSGSVSEPALPNSSCKNLQLLDLGGNKFSGSFPEFITKFGGLKQLDLGNNMFMGTIPQGLAGLRLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNSPGLCGPPLASCARTSTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNDEEEDEENGGNSIGGAGEGKLMLFQGGENLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCKDKASCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEAKAGKPVLNWARRHKIALGIARGLAYLHTGLEVPVTHANVRSKNVLVDDFFCSQAH 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01409 537 Gene3D Ribonuclease Inhibitor 50 188 IPR032675 -
Pumo5g01409 537 Gene3D Ribonuclease Inhibitor 189 263 IPR032675 -
Pumo5g01409 537 Pfam Leucine rich repeat 217 275 IPR001611 GO:0005515
Pumo5g01409 537 Pfam Protein tyrosine and serine/threonine kinase 397 530 IPR001245 GO:0004672|GO:0006468
Pumo5g01409 537 Gene3D Ribonuclease Inhibitor 264 311 IPR032675 -
Pumo5g01409 537 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 531 IPR046959 -
Pumo5g01409 537 MobiDBLite consensus disorder prediction 345 369 - -
Pumo5g01409 537 ProSiteProfiles Protein kinase domain profile. 393 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01409 537 SUPERFAMILY Protein kinase-like (PK-like) 397 530 IPR011009 -
Pumo5g01409 537 FunFam Leucine-rich repeat receptor-like protein kinase 215 307 - -
Pumo5g01409 537 Gene3D Phosphorylase Kinase; domain 1 377 469 - -
Pumo5g01409 537 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 114 205 - -
Pumo5g01409 537 Gene3D Transferase(Phosphotransferase) domain 1 471 534 - -
Pumo5g01409 537 SUPERFAMILY L domain-like 83 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01409 Pumo-Chr5 36934085 36936374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01409 10 535 Receptor kinase-like Gene Family AT3G24660 70.913 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo5g01409 PK_Tyr_Ser-Thr 4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01409 - - gmx:100791722 892.878