Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g01406 | ATGTCAGGGCAGAGAAGGCCAAGAGCTTCAAAGTTCACTGAGAATGAGATTAATGAACTTGTGTCTAGGTTACAAGTTCTGCTTCCACAAGTGAACCAAAGAGGCAACTCAAGGCAATCAGCGTCCAAGATCGTGCAGGAAACTTGTTGTCACATTAGGAGGCTGCAGGAAGAGGTGGAACAGCTCAGTGAGAGGCTATCAGAGCTCATGGATTCTGTGGATATCAGTGACATTGACAGAAGAACTTTACAAAACTTTTTGCAACAATAA | 270 | 0.437 | MSGQRRPRASKFTENEINELVSRLQVLLPQVNQRGNSRQSASKIVQETCCHIRRLQEEVEQLSERLSELMDSVDISDIDRRTLQNFLQQ | 89 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g01406 | 89 | PANTHER | DNA BINDING PROTEIN | 1 | 89 | IPR044172 | - | |
Pumo5g01406 | 89 | Coils | Coil | 45 | 72 | - | - | |
Pumo5g01406 | 89 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 15 | 72 | IPR036638 | GO:0046983 | |
Pumo5g01406 | 89 | Gene3D | - | 11 | 85 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g01406 | Pumo-Chr5 | 36842210 | 36844424 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g01406 | 9 | 74 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G39860 | 50.746 | 8.85e-17 | 67.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pumo5g01406 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g01406 | - | - | cam:101497180 | 129.028 |