Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01406 ATGTCAGGGCAGAGAAGGCCAAGAGCTTCAAAGTTCACTGAGAATGAGATTAATGAACTTGTGTCTAGGTTACAAGTTCTGCTTCCACAAGTGAACCAAAGAGGCAACTCAAGGCAATCAGCGTCCAAGATCGTGCAGGAAACTTGTTGTCACATTAGGAGGCTGCAGGAAGAGGTGGAACAGCTCAGTGAGAGGCTATCAGAGCTCATGGATTCTGTGGATATCAGTGACATTGACAGAAGAACTTTACAAAACTTTTTGCAACAATAA 270 0.437 MSGQRRPRASKFTENEINELVSRLQVLLPQVNQRGNSRQSASKIVQETCCHIRRLQEEVEQLSERLSELMDSVDISDIDRRTLQNFLQQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01406 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
Pumo5g01406 89 Coils Coil 45 72 - -
Pumo5g01406 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 72 IPR036638 GO:0046983
Pumo5g01406 89 Gene3D - 11 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01406 Pumo-Chr5 36842210 36844424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01406 9 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 50.746 8.85e-17 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g01406 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01406 - - cam:101497180 129.028