Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01404 ATGAAGGTGCTGTCTCCGAAATTGTTCACTCTCGCCATTCTCCTCGTGGCGCTTCTTTTAGCTACCGCCAACGCAGTCAATGACAATGAGATGCAGAAACATGAAGCCACGGAATCAAGGGATGTGGTTGAAGAAGAGAAGTTGCGAGTGCAGAGCTTCAAGAATTCGTCAATGGCACAAAGGTCAGGGGGTGCTTTGAATGAACATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATGAGAGCATACGCAATTACACAGCCAGAAGGAATCTGAACTTCTTCTCATGCGGCACCGGGAATCCAATCGACGACTGCTGGCGCTGCGACAGGCGCTGGTACGCCCGCCGCAAGCGGCTGGCCAACTGCGGCATCGGCTTCGGCCGCAACGCCATCGGCGGCCGCGACGGCCGCTACTACGTCGTATCGGACCCCGGCGACGACGACCCAGTGAACCCCAAACCCGGAACACTCCGCCACGCCGTGATCCAGGACCGCCCCCTGTGGATCGTGTTCAAGCGCGACATGGTGATCACCCTAAAACAGGAACTCATCATGAACAGCTTCAAGACCATCGACGGTCGCGGCGCGAACGTCCACATCGCTTACGGTGCGTGCATCACCATACAATTCGTCACCAATGTGATCATCCACGGGCTGCATATTCACGATTGCAAGGTGACTGGGAACGCCATGGTTCGGAGCTCCCCCTCGCACTATGGGTGGAGGACCCTCGCTGACGGGGATGGGATCTCGATCTTTGGTTCGAGTCACATTTGGATTGATCATAACTCGCTGTCCAATTGCGCTGATGGGCTTGTTGATGCTGTTATGGGGTCCACTGCTATTACCATTTCCAACAACTACTTCACCCACCACAACGAGGTTATGTTACTGGGTCACAGTGACTCTTATGTCCGTGACAAGCAGATGCAAGTAACCATTGCTTACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCCAGGTGCAGACATGGGTATTTCCACGTGGTTAACAACGACTATACCCACTGGGTAATGTATGCAATTGGCGGCAGTGCTAACCCCACAATTAACAGCCAGGGCAACAGATACTTAGCTCCTCTGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTGGACACAGGGTCATCCGTTTGGAAAAGTTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTCAATGGAGCCTTTTTCACTCCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCAAAATCGTCTTCTTTGGTTGGTACCATCACCTCTGGAGCTGGTGTTCTTGGCTGCCGCAGGGGTGTCATGTGTTAA 1356 0.528 MKVLSPKLFTLAILLVALLLATANAVNDNEMQKHEATESRDVVEEEKLRVQSFKNSSMAQRSGGALNEHAVDNPEEIASMVDESIRNYTARRNLNFFSCGTGNPIDDCWRCDRRWYARRKRLANCGIGFGRNAIGGRDGRYYVVSDPGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFVTNVIIHGLHIHDCKVTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPLNPFAKEVTKRVDTGSSVWKSWNWRSEGDLLLNGAFFTPSGAGAAASYARASSLGAKSSSLVGTITSGAGVLGCRRGVMC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01404 451 SUPERFAMILY Pectin lyase-like 80 445 IPR011050 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Pumo5g01404 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Pumo5g01404 451 Pfam Pectate lyase 185 366 IPR002022 -
Pumo5g01404 451 SMART amb_all 177 374 IPR002022 -
Pumo5g01404 451 FunFam Pectate lyase 102 444 - -
Pumo5g01404 451 Gene3D - 102 444 IPR012334 -
Pumo5g01404 451 PANTHER PECTATE LYASE 18-RELATED 70 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01404 Pumo-Chr5 36821645 36828272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01404 35 451 Polysaccharide Lyase AT4G13710 77.647 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01404 K01728 - gmx:100809277 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01404 5 36821645 36828272 Pumo5g01404 5 36821645 36828272 ECH