Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01403 ATGGTGGGGATAGAGCAGGAAGAGAGCGAGCACCATCGAAACGCGAATCCCTCCAACGCCGCCGCCGGTAACGACGCTTCCGACGGCTTCGAAACCGCCAGCGAGGCCGATCTCGACAGTGACGGCGAAGACGGCGGAGCCGGCAGCCGGGAAGAACAGAATCACACCGAACAGAATCACGCCGAGAAACACCATCAGCAGCATCAGATGGAGCAAGAGCCGGAGCACGATGTTCCTCAGAGCACCACCGAATCATCCGAGAGTGTTCCTCAGAGCACCGCCGAATCATCCGAGGATAATGCCTTGATCAATGAAGAAGAATCGAGACAGAAAGCATTGGATCAAGCAAATGATGCAAAGGTAGAAGGGAACAAGCTTTTTGGAGATGGGAAGTTTGAAGAGGCATTATTACAATATGAACTTGCTTTACAAGTAGTTCCAGACATACCTTCATCTGTGGAAATACGCTCTATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGACAACACAATTAAAGAATGCACAAAAGCATTAGAATTGAATCCTGTGTACGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACAATTCGGCGACTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAGGAAATGATTGGAAAACTGAAAGAAATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCATATTCTATCTCATTCCAACGGTAA 867 0.4648 MVGIEQEESEHHRNANPSNAAAGNDASDGFETASEADLDSDGEDGGAGSREEQNHTEQNHAEKHHQQHQMEQEPEHDVPQSTTESSESVPQSTAESSEDNALINEEESRQKALDQANDAKVEGNKLFGDGKFEEALLQYELALQVVPDIPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01403 288 MobiDBLite consensus disorder prediction 43 80 - -
Pumo5g01403 288 MobiDBLite consensus disorder prediction 1 116 - -
Pumo5g01403 288 SMART tpr_5 191 224 IPR019734 GO:0005515
Pumo5g01403 288 SMART tpr_5 157 190 IPR019734 GO:0005515
Pumo5g01403 288 SMART tpr_5 116 149 IPR019734 GO:0005515
Pumo5g01403 288 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Pumo5g01403 288 SUPERFAMILY TPR-like 113 234 IPR011990 GO:0005515
Pumo5g01403 288 Gene3D Tetratricopeptide repeat domain 73 254 IPR011990 GO:0005515
Pumo5g01403 288 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 54 288 - -
Pumo5g01403 288 MobiDBLite consensus disorder prediction 81 99 - -
Pumo5g01403 288 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Pumo5g01403 288 MobiDBLite consensus disorder prediction 102 116 - -
Pumo5g01403 288 Pfam Tetratricopeptide repeat 159 188 IPR001440 GO:0005515
Pumo5g01403 288 Pfam Tetratricopeptide repeat 192 224 IPR013105 -
Pumo5g01403 288 Coils Coil 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01403 Pumo-Chr5 36794317 36799497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01403 78 247 Calmodulin-binding Proteins AT3G25230 34.831 3.89e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01403 K24926 - gmx:100808386 423.32