Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01402 ATGACCTATCACACTTCCCAATTCCCTTTTGAGAGCACTTCGAAACTCCTTTCAACTCTTTTGATCAGTTTGGACTACAAGATCCAAACTCATCAGTTGGAGTTGATTTCTCTCCTCTGTTACACTGTTGTACCATTTGTTCTGATATTCCTCAGGGTTTCAGGTACAGAGATGGAAGATGGGGTAAAGGTAGCCAAAGTTGGAGAAAGCCAGAGAGAAGATTCGTCAAGAGTTTTTCCATGTCTATTCTGTCCAAGAAAGTTTTACAGTTCCCAAGCTTTAGGAGGGCACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGCCAAGAAGGCTTCTGAGTACCCAAGTGTTCCCTTCCCTTCCCCACTGCCAACCCCTATGGTTTTTGCTCCAACCCATCTAGACATTTTAAATCCTTCAATGTTCATCACTGCCCATGCAGCAAAACTCCCTCATCTCCCAAGCCATCAAATTTCAGAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAATGCACTATTTTATGGGGGAAGTTCAAAAAACCGGTTCCATGATGATGGGAAGAGCTCAAACTTCAGCTGGGGGGGCACATCTCAACATATACAATTGATAAGTAACAATCAAAATCTTGGAATTTGGAATAATGGTACAGAGAAAGATCAAAAGCTTGATTTATCTCTCCATTTGTAA 702 0.4174 MTYHTSQFPFESTSKLLSTLLISLDYKIQTHQLELISLLCYTVVPFVLIFLRVSGTEMEDGVKVAKVGESQREDSSRVFPCLFCPRKFYSSQALGGHQNAHKKERTAARKAKKASEYPSVPFPSPLPTPMVFAPTHLDILNPSMFITAHAAKLPHLPSHQISEQFGSNGAPRFGNALFYGGSSKNRFHDDGKSSNFSWGGTSQHIQLISNNQNLGIWNNGTEKDQKLDLSLHL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01402 233 Gene3D Classic Zinc Finger 56 120 - -
Pumo5g01402 233 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
Pumo5g01402 233 PANTHER ZINC FINGER PROTEIN JAGGED 71 233 IPR045320 GO:0003700
Pumo5g01402 233 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Pumo5g01402 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01402 Pumo-Chr5 36791398 36793446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01402 56 233 C2H2 Transcription Factor Family AT5G48890 38.919 9.49e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01402 - - gmx:100527084 337.806