Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01400 ATGGCACTAAATAAGACAGGAAACTTGTTAGGTACCAACACTGGTAAAGATCCTAACGTGTATCCTCAACACGCCCAACCGGAATTATCCGGTGGGGTTTCAAATACAGGACGTCATGTACATAAAAATATTGCTATACAGGCAGGGGAAGAATTTTCTGTGAATGTTGGTCGTGATGGAATTGCTGCTGGGAGGGTTCCAGTTTCACCTGACATACCTCGAATTCGTGAGAATGTGAATGTGTTTGGGTTAAATAAAGAGAATGGCCATGTGAGATATGAAGGTCTTACTAATATTTTGGGGTTGAGGAGAATGAACTCTGAGAGTTCTTCTGACATATCTGACTTTGTCTCTATAAAACAGCCAGCACAGGAGATGGAAAACGGAGCTTCTGTAAATATTTTAAGGAAAGTTCAAAAGGGAGATGGTGTATTGAGGAAGGTTGTTCAAGAGCCAGTTGGTGACCAGTCTGGTCTCGCGTCAGCTGTATCACCCCTTCGCAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGAATTTCAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTATGCAGCTTTGGTGGAAAAATATTACCGAGACCCAGTGATGGGAAACTCAGATATGTAGGGGGAGAGACTCACATTATATCTATCCGAAAGGATATTTCATGGGCAGAGCTTATGAAGAAGACCCTGGGTATTTGCAATCAACCTCACACAATCAAGTACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGATGAAGATCTTCAAAATATGAAGGAGGAATACCATGGGCTTGAAAGGCATGAAGGTTCTCAAAAACTTAGAATATTTTTAGTTCCTTTGGGTGAATCTGAAGAGACATCATCAACAGAGGTGAGTGCTGTTCAGCAGAGTGATCCTGATTACCAATATGTTGTTGCTGTAAATGGCATGGGAGACCCTACTAGGACAAACATTGGTGGGCAAAATTTGACAAATGAAGCCAGTCAATTGGGGACAGATTTGAATTTGGCTCCAGTTTTCCCAAAAACTCCAAATGCTTCTTCTCCTTTGGAGATCAGGGATGGTATTAATGCTTTAAATCCAGATGGAATTTTGAATGATTCCCTGAATTTGCAAAGTCCCTTGCCAATTTCTCCCACTCCAATCCAGGTAACAGGTTCTAGCACGGGTTATATACAATTGCTTGGTAACCACTCATGCCAGGGAAGTATTGAGAGCAATGCATCATTTGCCACTGCTCAGCTACATCCCGAGTACTCCAATATAAGAACTACTGATTGCAGATACCCTCAACAAGTGGCTGCTACTTTGTCTAGTGACACCCATCCTTATCAGCATGGTGATGTTGGTCAGCCCAAGAAGCTCAATGGAGGGAATTTGGACTACAATCCTGGCAAGGAATTAGCGACTCCTGTATATGTTAATCCAAGTAATGGTTACAGTGATGAAGTTTTTGGTGGAAGGTCCTTGCAAAAGGAAAGAAGAGTCTACTCTGAAAATCCTCTTTCATGCTTAGATGATCCAATCTATCAACAAGGTGAATCTTATGGAATTACAGACTCCCCTCATGGGATGCCCCATGCTTTTTCTGATCCACAGTTGCACGAGAGTGGAGCAAGGTCTGGTTACTGCTCACAAAATGGATTTGGTCAATCTTTCTCCCTAAACCTTGAAAAGGGTCAATTATCTTCAACATTACTCCCTAGTGTCTCACAAGTGAACCTTATGGAACATCAGCATGATTCCATTGTCCATCATCCTCAAATGCAAAGTAAGACACCAAAAGTTGAGTCAGCTGAGCTGCACAAAAGGCAAGATTTGGCATCTTCTTCTCCATACTATGAATCATTGGGAATGAATGATCCTGTTCATACGGATAGTATTTTAACTGAAAAAAAGAACCTTATTGCTCAAACTGACTTGAGTGGACCCAGCTATGTTGCAAAGGATATTCAGGAAAATTCCGTGAAATTAGAAAGGATGAAGATAATTGAAGAAAAGAATCCAATTCCCAAGGATAGAAAGGTTCATGAGGGGAAATCAACTGTCGTTGATATGGGACATGTGACTGAATTGCATCTTTTGGATTCCTTCCCTGCTAATAACATCAATGCTAAGATTAATATGCAAAAGAATTGGGAGCTACCTTCTGAGGGTATAGTTCCTTCTCCATCAGGCATGATGGGCCTTTCTCTAAATAATCTAGTGGGGAAGACTCCGTCTGATCCTGACATGGGCCAAAGGACTACTGATCACAAAAAATATGCTTTGGCTGAAGGTCTGAATGGTGAACAAGGGATTGATTTTTCATTGACCAGAAATTTTGATTTAAATGCTCCAATTTTAAATTGTGAAGTAGGCTCTAGTGATAAAAGTTCTCGAAGAGATCATATGTTCAAGCTTTCCATTCACCCAGATTCTCTTAAAGCTGCACAGATTCATCCTTCAAAGAATCAGATGGCTACAGGTTTTCAAGAAAATCCAACAGTAAGCTCTCCAAGTTTGTATCCTGCTGCATTTCGTGATGATCTCCGTCCAAGTCAAAACATGCCCATGAATGACCTGGATAATTCAAACAATATTATGTCTTTTAAAAAGGCACCATCTTTTCTTGATGACTTGATTACCAGCACTGGTCAGATGGTGGATCAGTTTATCCCTGAACACACTGCCTCTGGAATGTCAAAAGTTGAAGATAAAATTTCAGAACAATCAAAAATTTTAGAAAGGTGTAATGATGCAAATCGAGTGGAGCCATTTGTCGTAGTAGAAGACATGACTGGTGTTGTTCGTCCATATATTTCGGATGATATTGGAAGTGTTGTTGTATCCCCATCTCATACGGAAGCTGAGAGCATCCTCCCTGAATCTGATGAACCTGAGGATTTTAATGACGATCAATCAGACAAAAATGAATTCCTTTCCGATGCAATGATTGCAGAAATGGAAGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTAGGATCTGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATTAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGGTCTTCTGAGCAAGAACGCTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCAGATGGGGCTGGTGGAACCTTAGCAACTGTCACAGAGTATATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTACTTGTCAATCTAAGGGATCCACAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGAGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGGAATAGCAGTCGGGTTTCTGAAAAGGTTGATGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTTAGACCTCCTGTGCCCGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGAACCCGAAAGCCGGCCATCATTCACAGAGATAACTAGCAGGTTAAGATCTATGTCTATGGCCCTTCAATCAAAAGGGAATCATCAGGCGTATCAGTTAAGACCTAGTGGTGCTTCCTGA 3891 0.4107 MALNKTGNLLGTNTGKDPNVYPQHAQPELSGGVSNTGRHVHKNIAIQAGEEFSVNVGRDGIAAGRVPVSPDIPRIRENVNVFGLNKENGHVRYEGLTNILGLRRMNSESSSDISDFVSIKQPAQEMENGASVNILRKVQKGDGVLRKVVQEPVGDQSGLASAVSPLRRYEASQSNGFSGSGISDDFLSGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISIRKDISWAELMKKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHEGSQKLRIFLVPLGESEETSSTEVSAVQQSDPDYQYVVAVNGMGDPTRTNIGGQNLTNEASQLGTDLNLAPVFPKTPNASSPLEIRDGINALNPDGILNDSLNLQSPLPISPTPIQVTGSSTGYIQLLGNHSCQGSIESNASFATAQLHPEYSNIRTTDCRYPQQVAATLSSDTHPYQHGDVGQPKKLNGGNLDYNPGKELATPVYVNPSNGYSDEVFGGRSLQKERRVYSENPLSCLDDPIYQQGESYGITDSPHGMPHAFSDPQLHESGARSGYCSQNGFGQSFSLNLEKGQLSSTLLPSVSQVNLMEHQHDSIVHHPQMQSKTPKVESAELHKRQDLASSSPYYESLGMNDPVHTDSILTEKKNLIAQTDLSGPSYVAKDIQENSVKLERMKIIEEKNPIPKDRKVHEGKSTVVDMGHVTELHLLDSFPANNINAKINMQKNWELPSEGIVPSPSGMMGLSLNNLVGKTPSDPDMGQRTTDHKKYALAEGLNGEQGIDFSLTRNFDLNAPILNCEVGSSDKSSRRDHMFKLSIHPDSLKAAQIHPSKNQMATGFQENPTVSSPSLYPAAFRDDLRPSQNMPMNDLDNSNNIMSFKKAPSFLDDLITSTGQMVDQFIPEHTASGMSKVEDKISEQSKILERCNDANRVEPFVVVEDMTGVVRPYISDDIGSVVVSPSHTEAESILPESDEPEDFNDDQSDKNEFLSDAMIAEMEASIYGLQIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAGGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDSEWRKLMEECWSPEPESRPSFTEITSRLRSMSMALQSKGNHQAYQLRPSGAS 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01400 1296 MobiDBLite consensus disorder prediction 1 20 - -
Pumo5g01400 1296 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1097 1288 - -
Pumo5g01400 1296 SUPERFAMILY Protein kinase-like (PK-like) 997 1271 IPR011009 -
Pumo5g01400 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1134 1146 IPR008271 GO:0004672|GO:0006468
Pumo5g01400 1296 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1002 1096 - -
Pumo5g01400 1296 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 210 292 - -
Pumo5g01400 1296 PRINTS Tyrosine kinase catalytic domain signature 1128 1146 IPR001245 GO:0004672|GO:0006468
Pumo5g01400 1296 PRINTS Tyrosine kinase catalytic domain signature 1199 1221 IPR001245 GO:0004672|GO:0006468
Pumo5g01400 1296 PRINTS Tyrosine kinase catalytic domain signature 1243 1265 IPR001245 GO:0004672|GO:0006468
Pumo5g01400 1296 PRINTS Tyrosine kinase catalytic domain signature 1091 1104 IPR001245 GO:0004672|GO:0006468
Pumo5g01400 1296 SMART PB1_new 205 292 IPR000270 GO:0005515
Pumo5g01400 1296 Pfam Protein tyrosine and serine/threonine kinase 1012 1272 IPR001245 GO:0004672|GO:0006468
Pumo5g01400 1296 Gene3D - 209 291 - -
Pumo5g01400 1296 SUPERFAMILY CAD & PB1 domains 206 296 - -
Pumo5g01400 1296 ProSitePatterns Protein kinases ATP-binding region signature. 1015 1040 IPR017441 GO:0005524
Pumo5g01400 1296 Gene3D Transferase(Phosphotransferase) domain 1 1097 1292 - -
Pumo5g01400 1296 CDD STKc_MAP3K-like 1015 1272 - -
Pumo5g01400 1296 CDD PB1_UP2 194 289 - -
Pumo5g01400 1296 Pfam PB1 domain 207 291 IPR000270 GO:0005515
Pumo5g01400 1296 MobiDBLite consensus disorder prediction 958 981 - -
Pumo5g01400 1296 SMART serkin_6 1009 1278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01400 1296 PANTHER SERINE-THREONINE PROTEIN KINASE 235 1275 - -
Pumo5g01400 1296 ProSiteProfiles Protein kinase domain profile. 1009 1288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01400 1296 Gene3D Phosphorylase Kinase; domain 1 1002 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01400 Pumo-Chr5 36694134 36701430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01400 187 463 MAP Kinase Kinase Kinase AT1G16270 41.156 1.79e-44 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Pumo5g01400 PK_Tyr_Ser-Thr 1.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01400 - - gmx:100790135 2276.52