Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01365 ATGAAGTCTACTATGGCTCAGAATCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTGATGAAAAGAAAATTACATGCCGCTGCAAAAGCTTTTGTCACAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCCGCAGCTTACATTGAGACCCAGCAAACAAAAGCTAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAACGCAGTGCACAGTTACAACAGCGAAGAGATCCTAATCATCCTGCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATCCCAATAGGATGGCCCTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCCACTGCATTGCAGCAAATTCCAGGGCGGACTCCTTTGACCACTGACATCAAAGGAGAAGTTAATTTAGGTGCCACTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGACCTAATATGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTTTTGGCATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCTAATTATGGTGACATGGATCCTCGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTACCAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCAGATTCACCTAAGATGAAGATGGCTCAGTCACAACATTCATCTCAACAGCAGGAGCAATTACAGCAGCAGCAACTGCAGCAGAGTAACAAAAAAAGAAAACCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTTCTGTTCCTAATTCACCACCATCAACACATACACCTGGTGATGGATTAAATACAGCAAGCAGCATGCAGCATGTTAACAGTGTCCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGTCAAATTTGCTGGAGGACATGGATCGATTTGGAGATGTTGATGCTTTAGATGATAATGTTGAATCCTTTCTATCAAATGATGGCGGAGATGGTGGAAATCTCTATGGAACAGTGAAACAAAGTCCGGCTGAGCAACATAAAGAGTCTTCAAAAGGCTTCACCTTTGCTGAATTTAGTTGCATAAGAACAAGGAACAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCATCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGCAGAACACAAATCAGTTATTACAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACTGCTTCAATTGATAAATCTGTGCGGTTATGGGACACAACCAATCCAAGCCGTTGTGTGCAAGAATATAGTGGGCATTCTTCAGCTATAATATCTCTTGATTTCCATCCTAAAAAGACTGAACTTTTCTGCTTCTGCGATGGTGAAAATGAAATTCGGTATTGGAATATTAATTCATCCACCTGCTCCCGTGTAACTAAGGGAGGTAGTGCACAAGTGAGGTTTCAGCCTAGACTGGGGCATTATCTGGCATCAGCTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAAGCTGACACACAAATTTACACCCTCCAGGGTCATCCTGAACCAGTGAGATATATTTGCTGGGATGGGAATGGTGAAGCCTTGGCATCTGTGAGTCCAAATTTGGTGAAGGTTTGGAGTTTGACCTCAGGAGAATGCATTAATGAGTTCAGCTCCACAGGGAACCAATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGGTTGGACGAATTTCGTCCTTAGAGTTATGGAACATGACCGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATATCTGCTTTGGCTCAGTCTTCTGTCACTGGAATGGTTGCCTCTGCAAGTTATGACAACTATGTAAAGCTGTGGAAATAA 2343 0.4234 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQMQQLQLMQQRSAQLQQRRDPNHPALGGSINAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSGNMSTALQQIPGRTPLTTDIKGEVNLGATPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNMGVQVPKPNLTTQNQFVLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKMKMAQSQHSSQQQEQLQQQQLQQSNKKRKPGAANSTGTGNTSVPNSPPSTHTPGDGLNTASSMQHVNSVQKSMMMYGTEATGGLASSSNLLEDMDRFGDVDALDDNVESFLSNDGGDGGNLYGTVKQSPAEQHKESSKGFTFAEFSCIRTRNSKVTCCHFSSDGKWLASAGDDMKVVIWNMDTLQTESTPAEHKSVITDVRFRPNSSQLATASIDKSVRLWDTTNPSRCVQEYSGHSSAIISLDFHPKKTELFCFCDGENEIRYWNINSSTCSRVTKGGSAQVRFQPRLGHYLASASDKGVSIFDVEADTQIYTLQGHPEPVRYICWDGNGEALASVSPNLVKVWSLTSGECINEFSSTGNQFHSCVFHPSYSTLLVVGRISSLELWNMTENKSMTIPAHENVISALAQSSVTGMVASASYDNYVKLWK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01365 780 Coils Coil 85 105 - -
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Pumo5g01365 780 Pfam LisH 16 41 IPR006594 GO:0005515
Pumo5g01365 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Pumo5g01365 780 MobiDBLite consensus disorder prediction 327 412 - -
Pumo5g01365 780 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Pumo5g01365 780 Gene3D - 474 634 IPR015943 GO:0005515
Pumo5g01365 780 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Pumo5g01365 780 PRINTS G protein beta WD-40 repeat signature 767 780 IPR020472 -
Pumo5g01365 780 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 626 IPR001680 GO:0005515
Pumo5g01365 780 MobiDBLite consensus disorder prediction 306 412 - -
Pumo5g01365 780 SMART Lish 14 46 IPR006594 GO:0005515
Pumo5g01365 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 780 IPR044716 GO:0003714
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 659 697 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 577 617 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 534 573 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 620 656 IPR001680 GO:0005515
Pumo5g01365 780 SMART WD40_4 495 531 IPR001680 GO:0005515
Pumo5g01365 780 Gene3D - 635 780 IPR015943 GO:0005515
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Pumo5g01365 780 CDD WD40 503 780 - -
Pumo5g01365 780 Pfam WD domain, G-beta repeat 747 780 IPR001680 GO:0005515
Pumo5g01365 780 Pfam WD domain, G-beta repeat 541 573 IPR001680 GO:0005515
Pumo5g01365 780 Pfam WD domain, G-beta repeat 579 617 IPR001680 GO:0005515
Pumo5g01365 780 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Pumo5g01365 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 534 - -
Pumo5g01365 780 SUPERFAMILY WD40 repeat-like 497 780 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01365 Pumo-Chr5 35360303 35369720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01365 581 779 Miscellaneous Gene Families AT5G08390 23.039 2.20e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pumo5g01365 WD40 0.088 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01365 - - gmx:100786946 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01365 5 35360303 35369720 Pumo5g01365 5 35360303 35369720 ECH