Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01364 ATGGAGAGTACTCCAAAAAAGATAATTCAGGAAATGGAGAACAACGCATTCAGAGATCGAATGTTAGAGGACAATGATCACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTCTCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTGTGCGCGAGTCTCGATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTGCTTCTCAAGATCTATACTGATGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGAAATCAGGATTCTACTCCCCTCAATTTGATCCTCATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTAGTTCCTCCTCTATTATGAATTTGACGTCCCACTCAGGCAATGTGGGAACTTCTGAATGTCTGGAGCAATCAGGGTCAACTGCCAATGAAGGAGATGAAGGCACCGTCTATTCTGATGGAGAGCCTGATATTATTGGAACTCCCGCTAAAGGAGAAAAATTGCCTCAGGAAGAGCTTCCTCTACAACAGGAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCGTCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTTCACATCCCCGAGGATTTCCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGACGCCATTGAACTAAAGCAAATCAAAGTCAAACCTGACACCCCTTCTTCTTGTTCATTGGATAATGGTAACAAAGGACAAAATATAGATTGGTGGGCTGATCCTGACACAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATCGGAGATAGATATAAATGCGTTGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACACGCTCCAAGCTACCCGGCCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAACAGCCCAACATTATTCACAACATAATGTTGAGGCTGGCCACAGCACAGTTTGGGGAAGCTTCTATGGACCTGGAGTCTGTAGGAAACATGGAAGTTACTTCGGACGGCGGCGCCGCTTTGTTTGATGATGGAGAAGATAACCACATGGATTCTGAACCCACCAATTGA 1302 0.4255 MESTPKKIIQEMENNAFRDRMLEDNDHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCVRESRCPVCRHQYYHFPTVCQLLHFLLLKIYTDAYKRRENQTLEEEKKSGFYSPQFDPHTCESQAKFGHSGIPSSSSIMNLTSHSGNVGTSECLEQSGSTANEGDEGTVYSDGEPDIIGTPAKGEKLPQEELPLQQELSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVVNIDDEMLRCKVCQSSHPRGFPKVCLELDHFLEEQFPEEYGQRRDAIELKQIKVKPDTPSSCSLDNGNKGQNIDWWADPDTKVHIGVGCDFCGMFPIIGDRYKCVDCKEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLEQPNIIHNIMLRLATAQFGEASMDLESVGNMEVTSDGGAALFDDGEDNHMDSEPTN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01364 433 MobiDBLite consensus disorder prediction 158 172 - -
Pumo5g01364 433 MobiDBLite consensus disorder prediction 158 177 - -
Pumo5g01364 433 SMART ring_2 211 248 IPR001841 -
Pumo5g01364 433 SMART ring_2 36 75 IPR001841 -
Pumo5g01364 433 ProSiteProfiles Zinc finger ZZ-type profile. 319 383 IPR000433 GO:0008270
Pumo5g01364 433 ProSiteProfiles Zinc finger RING-type profile. 211 249 IPR001841 -
Pumo5g01364 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 293 IPR013083 -
Pumo5g01364 433 SMART zz_5 318 367 IPR000433 GO:0008270
Pumo5g01364 433 PANTHER UNCHARACTERIZED 26 412 - -
Pumo5g01364 433 Pfam Zinc finger, ZZ type 320 359 IPR000433 GO:0008270
Pumo5g01364 433 FunFam E3 ubiquitin-protein ligase PRT1 198 293 - -
Pumo5g01364 433 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Pumo5g01364 433 FunFam E3 ubiquitin-protein ligase PRT1 27 122 - -
Pumo5g01364 433 SUPERFAMILY RING/U-box 206 252 - -
Pumo5g01364 433 SUPERFAMILY RING/U-box 28 85 - -
Pumo5g01364 433 FunFam E3 ubiquitin-protein ligase PRT1 313 378 - -
Pumo5g01364 433 ProSitePatterns Zinc finger RING-type signature. 226 235 IPR017907 -
Pumo5g01364 433 Pfam RING-type zinc-finger 211 235 IPR027370 -
Pumo5g01364 433 Gene3D - 313 377 IPR043145 -
Pumo5g01364 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 141 IPR013083 -
Pumo5g01364 433 SUPERFAMILY RING/U-box 312 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01364 Pumo-Chr5 35325614 35336090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01364 21 113 C3H Transcription Factor Family AT2G42030 31.068 1.76e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01364 - - gmx:100787174 797.734