Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01278 ATGTCCACTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAATCATCGCCGTTCGGTTGTTGGGAGTGATGTGAGTGGTGAAGGGAGCCTATGCTTCTCTGATGCTGATGATGGTTCATGCTATTCCCGGTTCTACTCAACAAATGGAGGTTCTTATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTGCTCATTCTGGGAGGGCTTCTTCTGTTTCTGAGTGTTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGACTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAACAGGACCTGTGAAATTTGTCATTCTATTGCTCGGAATGTTTATGGAGGAAACGAGGAGTCGACAGGAGCATTTGAGTGA 528 0.4716 MSTLQMSHVDLEQGNHRRSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGGVAHSGRASSVSECSVEVETRTGVPEIKVHLAKVEKDCRICHMGLETDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSIARNVYGGNEESTGAFE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01278 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 164 IPR013083 -
Pumo5g01278 175 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Pumo5g01278 175 SUPERFAMILY RING/U-box 102 159 - -
Pumo5g01278 175 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Pumo5g01278 175 PANTHER ZINC FINGER, RING-CH-TYPE 17 166 - -
Pumo5g01278 175 SMART ringv_2 104 157 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01278 Pumo-Chr5 30644516 30647888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01278 74 168 C3H Transcription Factor Family AT5G05830 65.263 7.82e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01278 - - gmx:100808666 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01278 5 30644516 30647888 Pumo5g01278 5 30644516 30647888 ECH
Pumo5g01278 5 30644516 30647888 Pumo9g02365 9 57055438 57061097 ECH