Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01264 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCACTTGCTCAAGAAATGCATACAACAACATGGAGAAGGAAAGTGGCATCGTGTTCCTTTACTGGCTGGTTTAAACAGGTGCCGAAAGAGTTGTAGGCTAAGATGGCTGAACTATCTCCGTCCTAACATCAAGAGAGGAAATTTTGCGGAGGAAGAAGTGGAAATGATAATCAAACTCCACAAATTACTAGGCAACAGGTGGTCATTGATTGCAGGAAGGCTACCAGGAAGGACTGCCAATGATGTGAAAAACTATTGGAACTGTCATCTGAGTAAAAAGCTAAATGCTCTAGAAGCTGAAGATAGACAAATAACTAGAGATGTTCAAGTCATTAGGCCCCAGCCTAGGAACATTGGTTCAAGCTCAGTGAAAAGAAGGGGCCAGAATGAGTCCTCCAACTGA 435 0.4322 MGGVAWTEEEDHLLKKCIQQHGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIIKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEAEDRQITRDVQVIRPQPRNIGSSSVKRRGQNESSN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01264 144 Gene3D - 58 123 - -
Pumo5g01264 144 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Pumo5g01264 144 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Pumo5g01264 144 SMART sant 2 52 IPR001005 -
Pumo5g01264 144 SMART sant 55 103 IPR001005 -
Pumo5g01264 144 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Pumo5g01264 144 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Pumo5g01264 144 FunFam Myb transcription factor 3 55 - -
Pumo5g01264 144 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Pumo5g01264 144 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 124 - -
Pumo5g01264 144 CDD SANT 58 101 IPR001005 -
Pumo5g01264 144 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Pumo5g01264 144 Gene3D - 4 55 - -
Pumo5g01264 144 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Pumo5g01264 144 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01264 Pumo-Chr5 30425198 30428078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01264 5 131 MYB Transcription Factor Family AT1G66370 59.420 4.74e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g01264 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01264 K09422 - gmx:100809746 289.271