Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01261 ATGGCTGATGAGGGTAGTTTTGAGCATTACCATGTCCCACAACAAAGTAGAAGGGACAAGCTGAGAGTTTTCCCTCACAACCAACCTTGTTTCGTTGAATCTTCCTCCTCCACCCTTCACCCCACTTGTCCAACTTTACCCTCTCTCTACGATCCTTCTCTTATTCCTTCTGATTTGTTAGCTTGTGCCACCCAACAAGGTGGTGCTAAGGTACAAGGTTCCAATTTGATGATGGGGTTTGTTGAAGGAGGGGTTGTGAATGGTGATGCAATTCAAGTTATCAACAGTAACACAAACAACCACAACAACAACAACCCTTTTCTCTACCAGCTTCAGAACCTTAGGGAATTTGGTGACACCTACAATGATGGGAGTGAATCAATGATGGTGTTCAAGCCTGAGCCTTTGGCTTTGTCTTTGTCCTCCCACAGTAACAACAACACTCATCATAACCCTTTGGAACTGAACCTTCAGCGATATGGGGCTGTTATTCCGGGTTTGGTTGGAGGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTTGGACCCTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGGTTCTTGAAGCCCGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGGGTTCGTGGAATTTACGCTACCGAGAAGATTATTGCTCCTCCTGATGCATCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCTAGTAGTGGAGTTGTTGGTGGGGATGATCCACTTGGAGAATATGGGAATGAAGGTAGGAAGAAGAAGTGTAGACTATTAACCATGCTTGACGAGGGTTACAGGAGGTACAGGCAGTATTATCAACAGATGCATGCAGTAATAACTTCTTTTGAGTATGTTGCTGGCCTTGGTAATGCGGCCCCGTATGCAAGTTTGGCTATAAATGCCATGTCCAAACACTTTAAATGCTTGAAGAATGCTATTAGTGACCAGCTGCAGTTCATCAACAAGGCTCCTTTTCAGATAAGCAACAAGAAGGATGAACCTCCAAGGTTACACAACAGTGATAGGGGCAATTACAGCCAAAGGCCAGGGTTTCTTGAGCACCATCAACCAGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCCGTGAGTGTACTCCGAGCCTGGTTGTTTGAACACTTTCTGCACCCTTATCCTACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGCAACCAGGTGAAGATTCAAGATAAAGGATCCATGTGTTATAAATCATTTCATGTACTTGTTGATGGATTCTAG 1299 0.4511 MADEGSFEHYHVPQQSRRDKLRVFPHNQPCFVESSSSTLHPTCPTLPSLYDPSLIPSDLLACATQQGGAKVQGSNLMMGFVEGGVVNGDAIQVINSNTNNHNNNNPFLYQLQNLREFGDTYNDGSESMMVFKPEPLALSLSSHSNNNTHHNPLELNLQRYGAVIPGLVGGNSEVSRNSVPLGPFTGYASILKGSRFLKPAQQLLEELCDVGVRGIYATEKIIAPPDASLMEPPHEGLSASSGVVGGDDPLGEYGNEGRKKKCRLLTMLDEGYRRYRQYYQQMHAVITSFEYVAGLGNAAPYASLAINAMSKHFKCLKNAISDQLQFINKAPFQISNKKDEPPRLHNSDRGNYSQRPGFLEHHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVKIQDKGSMCYKSFHVLVDGF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01261 432 Gene3D - 372 414 - -
Pumo5g01261 432 CDD homeodomain 366 414 IPR001356 GO:0003677
Pumo5g01261 432 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 111 412 - -
Pumo5g01261 432 Pfam Associated with HOX 190 321 IPR006563 -
Pumo5g01261 432 Pfam Homeobox KN domain 383 413 IPR008422 GO:0003677|GO:0006355
Pumo5g01261 432 SUPERFAMILY Homeodomain-like 356 414 IPR009057 -
Pumo5g01261 432 SMART prehox3 185 322 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01261 Pumo-Chr5 30246021 30251287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01261 1 412 Homeobox Transcription Factor Family AT5G02030 44.898 6.34e-93 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01261 - - vun:114185080 662.529