Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01227 ATGAACTACACATTTGACGTGTTTGTGAGCTTCTGTGGTGAAGACACACGCAACAGCTTCGCTGGCTTTCTCTTTGAAGCTCTCTGTAGAAATGGCATCGATGCCTTCAAAGATGATGAAAATCTCAAGAAAGGCCAATCCATAGCACCCAAGTTGTTACAAGCGATTGAAGGCTCTCGCATTTTCATAGTGGTTTTCTCAAAGAACTATGCATCCTCAACTTGGTGCTTGCGTGAACTTGCAGAGATCTGCAACTTCATTGAAACATGGCAAAGATGTGTTCTGCCTATTTTTTATGATGTTGATCCATCAGAGGTGAGAAAACAGAGTGGACATTATGAGGAAGCCTTTGCCAAACATGAAGAAAGGTTCAGAAAAGATAAAAAGAAGATGGAGGAAGTGCAGAGATGGAGAGATGCTCTGACACGACCACAATATGCAGAGATTGATGAAATTGTTCAAAAGATAGCAGATATATTGGGTCCCAAATTTTCAAGTCTTCCAAATGATAATCTAGTGGGGATGCAATCTCGTGTTGAAGAATTAGCAAAGCTTTTACATTTGAGGTTAGCTAATGACATTCGAGTTGTCGGAATTAGTGGGATGGGAGGAATAGGAAAGACAACTCTTGGTCGTGCTTTATATGAAAGAATCTCTTGTCAATACGATTTTCGATGTTTTATTGATGATGTAAGCACAATTTATCGAGATTCCAGTACATTAGGTGTACAAAAACAATTACTTTCTCAATCTCGAAATGGAAGAAATACAAAGATTTGTAATGTTTCTGAGGGAACATGTTTGTTATGGACTAGGCTACACAATGCAAGGGCACTTATAGTTCTTGATAATGTTGATCAAGTTGGGCAGCTAAAGATGTTTAGTGGGAATAGAGAGACCCTTTTACGTGAATGTCTAGGAGGAGGGAGCAGAATCATCATAATTTCTAGGGATGATTATATATTAAGGACCCATAGAGTAGATGATATCTACCAAGTCCAGCTGTTGAATCACGAAGATTCTATTCAATTGTTTTGCAGAAATGCTTTCAAATTGACATATGGTGTACTATCACATGCTCAAGGCCATCCCTTGGCAATTGAAGTATTGGGCTCATCTTTGTATGGAAGAAATGTGTCACAATGGAGAAGTGGATTGGCTAGGCTAACAGAAAATAAAAGTAAAAATATTATGGATGTGTTGCGAATTAGTTTTGATGAGCTGGATGACACAAACAAGGAAATATTTTTAGACATTGCTTGCTTCTTCAACGAGTACCCAGAGCAATATGTGAAAGAAATTCTGGATTTCCGTGGATTTCATCCTGAATATGGCCTAGGAGTTCTCGTTGATAAGTCACTCATAACCATTGAGAGGGGTTGGATGAGGATGCATCGCTTGTTGATAGATTTGGGCAGGTCTATTGTTCGATAA 1434 0.3877 MNYTFDVFVSFCGEDTRNSFAGFLFEALCRNGIDAFKDDENLKKGQSIAPKLLQAIEGSRIFIVVFSKNYASSTWCLRELAEICNFIETWQRCVLPIFYDVDPSEVRKQSGHYEEAFAKHEERFRKDKKKMEEVQRWRDALTRPQYAEIDEIVQKIADILGPKFSSLPNDNLVGMQSRVEELAKLLHLRLANDIRVVGISGMGGIGKTTLGRALYERISCQYDFRCFIDDVSTIYRDSSTLGVQKQLLSQSRNGRNTKICNVSEGTCLLWTRLHNARALIVLDNVDQVGQLKMFSGNRETLLRECLGGGSRIIIISRDDYILRTHRVDDIYQVQLLNHEDSIQLFCRNAFKLTYGVLSHAQGHPLAIEVLGSSLYGRNVSQWRSGLARLTENKSKNIMDVLRISFDELDDTNKEIFLDIACFFNEYPEQYVKEILDFRGFHPEYGLGVLVDKSLITIERGWMRMHRLLIDLGRSIVR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01227 477 SUPERFAMILY "Winged helix" DNA-binding domain 396 477 IPR036390 -
Pumo5g01227 477 Pfam TIR domain 5 160 IPR000157 GO:0007165
Pumo5g01227 477 Gene3D - 335 409 IPR042197 -
Pumo5g01227 477 Gene3D - 1 161 IPR035897 -
Pumo5g01227 477 Gene3D - 163 330 IPR027417 -
Pumo5g01227 477 Pfam NB-ARC domain 178 396 IPR002182 GO:0043531
Pumo5g01227 477 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 142 IPR035897 -
Pumo5g01227 477 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 157 - -
Pumo5g01227 477 SMART till_3 4 147 IPR000157 GO:0007165
Pumo5g01227 477 ProSiteProfiles TIR domain profile. 3 131 IPR000157 GO:0007165
Pumo5g01227 477 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 477 IPR044974 GO:0006952
Pumo5g01227 477 PRINTS Disease resistance protein signature 360 374 - -
Pumo5g01227 477 PRINTS Disease resistance protein signature 272 286 - -
Pumo5g01227 477 PRINTS Disease resistance protein signature 196 211 - -
Pumo5g01227 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01227 Pumo-Chr5 28911362 28913027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01227 173 476 WRKY Transcription Factor Family AT5G45050 35.238 1.38e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01227 - - vra:106780741 642.114