Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01221 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCATCAGAAGGGTCGGCAGGGGTGAAGCTGCCGCCAGTTGAGACTGTTACAGTTGCGTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACTGCTGCTTCCCTTGTTATGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGGGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCGATCGCCACTTATGGACGCCTGTTCCGGCTGCACCCTCCGCAACTCCTATGGCGTGTGGGGCGACCGGAGGGACTGTTCCGCCCTCAACGCGACATACCTGATGATCGAAGAAGAGTTTTGGTTGGCGGTGGCCTACGTGGTCCAGAACAACCTCAAGGCCAAGGTTGTCACAAAATTCTCACACACCATTCCCAAGTTAGTTTGCCCACACGAAACACCAGTGTCAACAACAGCAGTGCAACGTTGCTTATCAGCACGGAGAAGTACTAA 504 0.5496 MLQIRLSKAPASEGSAGVKLPPVETVTVACPDHLVLADLPVAKGIGAATAASLVMTLGRRSRRQLGERVHFCVRCDFPIATYGRLFRLHPPQLLWRVGRPEGLFRPQRDIPDDRRRVLVGGGLRGPEQPQGQGCHKILTHHSQVSLPTRNTSVNNSSATLLISTEKY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01221 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 85 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01221 Pumo-Chr5 28332174 28334246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01221 1 85 C2H2 Transcription Factor Family AT5G01160 70.588 2.01e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01221 K15685 - gmx:100803063 161.384