Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01213 ATGTGTCCACCAATGTTAATTGATGAGTTTATTGAAAACCATGGTGATGTTGATGAAGAAGAAGATCTGGGAGATGAAATTCACATGGAACCAGAAGAAAATGCACACCAAGAGGATGAAGATCTAAATGTCATATATGAAGGAGATGCACAACTACAGGAAGATGACATTATGAATGGTACAAGTAAGAAAAGAACACGGGGACCAACACAGTGCTTAAGAATTCATTCAAGACCTGCTCAACACCGTGAAGTAGTTATCTTAGACAATGATGGGGAGCCAATTGGACCCAACAATAAAATTGTATCTGATTTGAGTTATTTCCTTGGCACTATAGCAAGGAATGCTGACTTTTGTCCCTTGATTTATACAAACTTCAAAGTTTTGATGAAAGATCACAGGAAGAGTATATGGGATTATGTGAATGAAAAGTACAATATTCTTGATGAAGGACAAAAAGCTGTGTTTACTCGCATAAATGATGCTTGGAGACGTTATAAGAGTTGCATCAAGAAGAAACATTTTGAGAAATACTCTACTTTGAAGGAAAGGTTAAAAAGTCATCCTGAGACTATACCTGAAGCTCATTTTAAGCAGTTGATGACTTATTGGAGAAGTAGTATTATCCAAGATATTAGCAAGAAAAATGCTTTGAATAAGGCTAAACAAAAGTATTTGCATCATACGGGACCTATAAATTTTGCAATAATTCGTGCTGAATTGAGTCAAAAGAAGAAAAAGGGAGAGGAAGTTACTCAAGCTGAAATGTTCATTGAGACCCGCAAAGCCCAGCCGAAAGGAAAAGAAGTGGATGAAGAAACACAATTTGCTATTTTTTCTATTACACCTCATGAAGACAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCAGCTCCACATTGTCTCAAGTCTTTCTTGAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCACGCCAACCTTCTTCGACCCAATGCAGATAAAGAAGATGGAAATGAGTCGGAGGCACAAAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTCGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGGTCAAATTCCCAGCAACATGATCTGGAAGACAAATCTCGCAGACAGACACCTAGAGAGCAACCACCTTCGAGGCAAACCCTGCAGCAAAAGCCACCATATTATGGTCAACAACAGCACCCTTCGGATACCATGTCTGGCTCTGTTGGAGGTGGACAACAGGGCTTTCATCAACAAAGTTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAGTTTGCTGACAGGCAACAATCAGTTGGTCCAGAGACCCCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCTTCCAATGTTCCCTCACTGGTTACTTCAAACCCAATGCTGAACCCTCCCATGCCATTTGGTTATCCCCCTTACCCAAACGAACGAGCTCAACCATTTTACGGTGCTCCATATGATATGCCTCGGCAGGACTCGGGTTCTGATATAGGTGGGGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGTCCCAAGTGGCCCAAATTTTCCAGGAAACTATCCCCAGCCATGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGTATATTGGCACCACAGCCCATGCCACTCCCACCACCACCTCCACCTCCACCCCACATGTCACATGGGAAACAAAACTACTATTCTGGGGAGCTTGGACATGATAGTCAGGGTTATGGGGGGTGGCAGCATGATAACCGCGATGGCTTTGGTAGCCAAGGCTAG 1929 0.4313 MCPPMLIDEFIENHGDVDEEEDLGDEIHMEPEENAHQEDEDLNVIYEGDAQLQEDDIMNGTSKKRTRGPTQCLRIHSRPAQHREVVILDNDGEPIGPNNKIVSDLSYFLGTIARNADFCPLIYTNFKVLMKDHRKSIWDYVNEKYNILDEGQKAVFTRINDAWRRYKSCIKKKHFEKYSTLKERLKSHPETIPEAHFKQLMTYWRSSIIQDISKKNALNKAKQKYLHHTGPINFAIIRAELSQKKKKGEEVTQAEMFIETRKAQPKGKEVDEETQFAIFSITPHEDSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTLQQKPPYYGQQQHPSDTMSGSVGGGQQGFHQQSFDMQHPPQEPSQFADRQQSVGPETPFPEYPTMHPAQPSNVPSLVTSNPMLNPPMPFGYPPYPNERAQPFYGAPYDMPRQDSGSDIGGDQSSLLGFPQGVPSGPNFPGNYPQPWNSGIGGVPFEQAQGGGMVVDPREGKGILAPQPMPLPPPPPPPPHMSHGKQNYYSGELGHDSQGYGGWQHDNRDGFGSQG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01213 642 ProSitePatterns Zinc finger C2H2 type domain signature. 326 349 IPR013087 -
Pumo5g01213 642 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 287 632 IPR040383 GO:0016567|GO:0061630
Pumo5g01213 642 MobiDBLite consensus disorder prediction 410 469 - -
Pumo5g01213 642 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Pumo5g01213 642 MobiDBLite consensus disorder prediction 517 642 - -
Pumo5g01213 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 321 IPR013083 -
Pumo5g01213 642 MobiDBLite consensus disorder prediction 533 547 - -
Pumo5g01213 642 MobiDBLite consensus disorder prediction 593 609 - -
Pumo5g01213 642 MobiDBLite consensus disorder prediction 354 496 - -
Pumo5g01213 642 Pfam Plant transposase (Ptta/En/Spm family) 195 276 IPR004252 -
Pumo5g01213 642 MobiDBLite consensus disorder prediction 367 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01213 Pumo-Chr5 27781647 27810567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01213 288 641 C2H2 Transcription Factor Family AT5G01160 39.503 8.05e-60 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01213 K15685 - gmx:100817582 655.595