Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01202 ATGAGCGCAAATTTGAGGCTGATTTTGCCGTTCGACTTCTCCAACAATTGCGCCATGAATACTTTGCCCTCAGAAGGAACAACTAGGCATGGAAATCAAGCTTTTAGGTCAAAAGATTTTGCTTTGGAACCTTGCAACAAGAAGCCATCCCATCAAAGACTTCAGAATCAAATGCATAAAGACCACATACTTTTGAATCCTAATGCTAAATTTCCTCAGATTGGTTGTGTTGGTTTCAAGCATGGCAATTGGAAGAAGAGGAAATTTGACCAGTATATGAATGGTGATAAATTCGCTACTACTCTTGCATTTATCGCCAAAGAGAAATGTGGAAATAGAAATGCCATCCTAAATGAGAAAATGGAATATTACAACATTTGTAGGCAAGATTATACTCAAGGGCTAAACCCAATGAAACAAAGACAGTTGAAAGCATTGGAATCATTGGTCAATGAAGATTTTGACAATTCAAATGAGAATTCACATTCATTTTGCTCAAAAAATGAAGATGTGGAACTCAATCAACCCCAAAACAACCTATCTTTCAAGGATAATCATATTTCAAGGCCAGTTATTCCTGTAGGACCTCGTTTTCAAGCTGAAGTTCCAAAGTGGGAAGGTAGAACCAATGTACGACATCATAATATTGATGGTGATTTAAAGTTGTTGGGCATCCAGCTATGGCTTATGCCTAATATTAGCGAAAACAAGACAAAAGATATTGGGGAAGGTAGGTGTGATTCATGCTCATGTGAATTTCCAGGATCAGTTGATTGTGTTAAACTACATATTAGGGAAGCAAGAGAACTCTTGAAATTGGAGATTGGAACAACATTTTCAAGTTGGAAGTTTGATGAGATGGGGGAAGATGTTTCAAAGTCATGGGCATTGGAAGAGCAGAAGAAATTTGAATCTTTAGTAAGATTAAATATATCAAATGGCACAAATCTTTGGAAGCTCATCATGAAGCACCTTCCATCCAAATCCATGAAGTGCATCATAAATTACTATCATAATGTATACATCCCAAGACGTTTGAGCATGGAGACAAGATCTTCCCATGATGTAGTTGATAGTGACAATGATCAAGATGAAAACCTCTAA 1104 0.3696 MSANLRLILPFDFSNNCAMNTLPSEGTTRHGNQAFRSKDFALEPCNKKPSHQRLQNQMHKDHILLNPNAKFPQIGCVGFKHGNWKKRKFDQYMNGDKFATTLAFIAKEKCGNRNAILNEKMEYYNICRQDYTQGLNPMKQRQLKALESLVNEDFDNSNENSHSFCSKNEDVELNQPQNNLSFKDNHISRPVIPVGPRFQAEVPKWEGRTNVRHHNIDGDLKLLGIQLWLMPNISENKTKDIGEGRCDSCSCEFPGSVDCVKLHIREARELLKLEIGTTFSSWKFDEMGEDVSKSWALEEQKKFESLVRLNISNGTNLWKLIMKHLPSKSMKCIINYYHNVYIPRRLSMETRSSHDVVDSDNDQDENL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01202 367 Pfam Myb-like DNA-binding domain 293 339 IPR001005 -
Pumo5g01202 367 Gene3D - 295 362 - -
Pumo5g01202 367 SMART sant 291 343 IPR001005 -
Pumo5g01202 367 SUPERFAMILY Homeodomain-like 293 342 IPR009057 -
Pumo5g01202 367 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 146 364 - -
Pumo5g01202 367 CDD SANT 294 340 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01202 Pumo-Chr5 27344768 27353073 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g01202 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01202 - - pvu:PHAVU_008G107600g 348.206