Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01198 ATGAATAGGGGAATTGAAGTACTGTCTCCAGCCTCCTATCTCCAAAATTCCAACTGGTTGTTCCAGGAAAGCAAGGGAGCAAGATGGACTGCAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGACACCCCAGATAGATGGATGATGGTGGCAGCCATGATTCCAGGGAAAACTATTGGTGATGTGATCAAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGCTATACTACCAGTTCTTTCACATTGGAGTGGGTTAACAATCAAGGCTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGGGGTGCATCCACTAGGCCAACTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAACACAGGCAGTTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCATACAGGAGGGAAGGATAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAAACCTTCTTCTCCACATCAGAATCAGAAATTGTCTAGCATGGTTAAGCAGGAATATGAATGGAAATTGCCATGTGATGACATGCCAATTGTTTTCAATTCCACAAATGGAAACATGTTCATGGCAACACCACTTCATGGCATTTCTTCATATGAATCTAGACCACAGGAGCAAAATTTACTTAGACAATCCGCATGGATGCCAGTTTTCACCTTGTGA 861 0.4379 MNRGIEVLSPASYLQNSNWLFQESKGARWTAEENKLFENALAYYDKDTPDRWMMVAAMIPGKTIGDVIKQYRELEEDVSVIEAGLIPVPGYTTSSFTLEWVNNQGYDEFKQFCSVGGKRGASTRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQHTGGKDKRRSSIHDITMVNLQETKSPSSDTTKPSSPHQNQKLSSMVKQEYEWKLPCDDMPIVFNSTNGNMFMATPLHGISSYESRPQEQNLLRQSAWMPVFTL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01198 286 SMART sant 25 77 IPR001005 -
Pumo5g01198 286 SMART sant 132 182 IPR001005 -
Pumo5g01198 286 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Pumo5g01198 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pumo5g01198 286 FunFam Transcription factor SRM1 21 88 - -
Pumo5g01198 286 MobiDBLite consensus disorder prediction 117 136 - -
Pumo5g01198 286 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Pumo5g01198 286 FunFam transcription factor MYB1R1 134 185 - -
Pumo5g01198 286 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Pumo5g01198 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Pumo5g01198 286 MobiDBLite consensus disorder prediction 204 227 - -
Pumo5g01198 286 CDD SANT 135 180 IPR001005 -
Pumo5g01198 286 CDD SANT 28 74 IPR001005 -
Pumo5g01198 286 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 251 IPR043363 -
Pumo5g01198 286 Gene3D - 21 88 - -
Pumo5g01198 286 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pumo5g01198 286 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Pumo5g01198 286 Gene3D - 134 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01198 Pumo-Chr5 27290225 27293043 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g01198 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01198 - - gmx:100775697 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01198 5 27290225 27293043 Pumo5g01198 5 27290225 27293043 ECH
Pumo5g01198 5 27290225 27293043 Pumo1g00228 1 3507867 3510296 ECH
Pumo5g01198 5 27290225 27293043 Pumo9g02353 9 56951469 56953662 ECH
Pumo1g00228 1 3507867 3510296 Pumo5g01198 5 27290225 27293043 ECH