Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01181 ATGAACCATCCTTGTGTAAACTCTAGGAGCCTGTTGTTACAAATCCTTAATGGATGTATTCTTCTATGCATGATCTTAATCAAGGACTCAGCAATAGCAGCAACCCCTGCAGGAAATGGAACTGATTTGCAAGCTTTACTTGACTTCAAGAGTAGGATAGTTGAAGATCCATTCAACATTATGAGATCTTGGAATGACTCCATCAATCACTGCAATTGGATAGGAATCACATGCAACATCTCCAGTGGAAGGGTCATACACCTTAGCCTTGAGCAATTGAGACTAGGAGGCACTCTTACACCATTCATAGGAAACCTCACATTCCTCACCAAACTCAACTTGTTAAACAATAGCTTCCATGGCGAATTTCCTCAAGAGGTTGGTCGTTTACTATACCTTCAATACCTAAACTTCAGCTTGAATAACTTTGCTGGGAGTATTCCAAGTAATCTCAGTCACTGCACAAGACTAAGAGTACTAGCTACAGGTGCTAACAATCTTACAGGAACAATCCCAACTTGGATAGGAAACCTTTCTTCATTGTCTCGCATTAGCTTTGGCTTAAACAACTTCATTGGAAGCATACCACATGAGGTAGGCCTTTTATCAAGCTTGACATATCTTGTGCTATATGGGAATTACTTGTCTGGCACGGTTCCTTCTTCAATCTATAACATCTCTTCCTTATATTATTTCACTTTTACTCAAAACCATCTTCATGGAACCTTACCAGCTGATGTTGGATTTACTCTTCCTAACATTCAAGTATTTGCTGGTGCGGTCAACAATCTCACAGGGTCTGTTCCTGCATCATTGTTGAATGCATCAAAACTAGAAATTCTTGATTTCTCCTTGAATGGTCTCACTGGAGCACTGCCTAAGAACTTAGGGGTCTTGCACAGGTTAACTAGACTTAGCTTTGAGCACAACAGACTTGGAACTGGGAAAACGGATGACCTTAGCTTTCTTGATTCTTTGGTCAACTGCACAGCTCTACAAGTTTTACGTCTAGCTGTAAATAATTTTGGTGGAATGTTGCCTAAATCAATTGCTAATTTCTCAAGCCAATTGCACACATTTGTCCTTGGTTCTAATAGAATACATGGAAATATACCTGTTGGAATTGGAAATCTTGCTAACCTGGCCCTTATAGGATTGGAAGGAAACCAGTTAACTGGTAGTGTACCTGATGCATTAGGTAGGCTGCAAAATCTGCAATTATTGTATCTGAATGTCAACAGATTTTCAGGTAGAATCCCATCCTCCTTGGGAAATTTATCTTTAATAACAAAACTCTTTCTGGAGGAAAACAACTTTGAGGGAAGCATACCTTCTAGCCTTGGAAACTGCCAAAAGTTATTGGTACTCAGCCTTTATAGCAACAAGCTTAGTGGCACCATACCAACAGAAGTTATTAGCCTTTCTTCACTAGCAATATACTTTGATGTGTCTTATAATGCTTTGTCAGGGACCCTGCCGGCTGAAGTGAGTAAGCTACAGAATCTTGGAGAGTTGGTGCTGTCTGAGAACAACTTTTCTGGAGTCATTCCATCTTCTCTTGGCAGCTGTATTAGCTTGGAAAAGCTGCATTTGCAGGGTAATTCTTTTGAGGGAAACATTCCTCAAACTTTAAAGAATTTGAGAGGTTTACTCGACATAGATCTTTCACGAAATAACTTGTCAGGTAAGATTCCTGAGTTTCTTGGTGAGTTCACTGAGCTCAAGCATCTCAATCTTTCATACAATAATTTTGAAGGTGAAATACCAAAGAATGGAATCTTCAAAAATGCAACTTCCATTTCATTATATGGAAACAGCAAGCTATGTGGGGGTGTCCCAGAACTAAACTTCCCTCCATGCACTATCAAGAAGAGGAAGGCCTCTCGGCTAAGAAAACTTGTTGCCTCTAAGGTGGCTATCCCTATAGCTATTGCACTTATGTTAGTATTGTTTCTATCATGTTTTCTTACATTGTTCCCCATAGTAAAAAGAGCAAAAAATAAAACACCTACATCAACTGCTGAAAAGGCTTTGGAATTGGCAATTTCTTACTCAGAAATTGCCAAGTGCACTGGTGGGTTCTCCCAGGATAACCTGATTGGCTCAGGAAGTTTTGGTTCTGTATACAAAGGAACTCTCTCTGGTGATGGATCAAGTGTTGCAGTCAAAGTGTTAAATCTTCAACAGAGAGGAGCTTCAAGGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATCATCAAGGCAATGACTTCAAAGCTCTAGTGTTTGAGTACATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTGTAAATAATGTGAAATATCAGACCAAGACACTGACATTTATCCGAAGACTGGACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGCAATGTACTTCTTGACAATGATGTAGTTGCCCATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAGCAAGTTTTCCACACAACCAGTTATTTCAGCTAGCCTAAGGGGTTCTATTGGATACATCCCTCCAGAGTATGGTATGGGTGGGAAGGCTTCTACACTTGGAGATATCTACAGTTATGGGATACTATTACTGGAGATTTTCACAGGAAAAAGACCAACAGATGAAGCATTTGAAGGTGGCATGGGAATTAACCAGTTTGTAGCAATGGCTCTGCCTAACCATGTCATGGATATAGTTGATCCTTCATTCGTTTCTGAACAAGACTTTGATGAGGAAAATCAAGAATTTGAGGGTGAAGAGAAAGCTATAAGGTGCAACTATGAGATTGAAGCCCCGGCTAAAGCTTTGATGGAGGATTGCTTTGTGTCACTGATGCAAATTGGAGTGTCTTGCTCTGCAAATCCACCTAGTGAACGAATGCCAATCACAGTGGTGATCAACAAACTACATGCTATCAAGAACTCGTTTATAGAGATAAAGCATAGTGCTATATGA 3069 0.3998 MNHPCVNSRSLLLQILNGCILLCMILIKDSAIAATPAGNGTDLQALLDFKSRIVEDPFNIMRSWNDSINHCNWIGITCNISSGRVIHLSLEQLRLGGTLTPFIGNLTFLTKLNLLNNSFHGEFPQEVGRLLYLQYLNFSLNNFAGSIPSNLSHCTRLRVLATGANNLTGTIPTWIGNLSSLSRISFGLNNFIGSIPHEVGLLSSLTYLVLYGNYLSGTVPSSIYNISSLYYFTFTQNHLHGTLPADVGFTLPNIQVFAGAVNNLTGSVPASLLNASKLEILDFSLNGLTGALPKNLGVLHRLTRLSFEHNRLGTGKTDDLSFLDSLVNCTALQVLRLAVNNFGGMLPKSIANFSSQLHTFVLGSNRIHGNIPVGIGNLANLALIGLEGNQLTGSVPDALGRLQNLQLLYLNVNRFSGRIPSSLGNLSLITKLFLEENNFEGSIPSSLGNCQKLLVLSLYSNKLSGTIPTEVISLSSLAIYFDVSYNALSGTLPAEVSKLQNLGELVLSENNFSGVIPSSLGSCISLEKLHLQGNSFEGNIPQTLKNLRGLLDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATSISLYGNSKLCGGVPELNFPPCTIKKRKASRLRKLVASKVAIPIAIALMLVLFLSCFLTLFPIVKRAKNKTPTSTAEKALELAISYSEIAKCTGGFSQDNLIGSGSFGSVYKGTLSGDGSSVAVKVLNLQQRGASRSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEYMSNGSLEDWLHPVNNVKYQTKTLTFIRRLDIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDVVAHVGDFGLATFLFEESSKFSTQPVISASLRGSIGYIPPEYGMGGKASTLGDIYSYGILLLEIFTGKRPTDEAFEGGMGINQFVAMALPNHVMDIVDPSFVSEQDFDEENQEFEGEEKAIRCNYEIEAPAKALMEDCFVSLMQIGVSCSANPPSERMPITVVINKLHAIKNSFIEIKHSAI 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01181 1022 SUPERFAMILY Protein kinase-like (PK-like) 676 1007 IPR011009 -
Pumo5g01181 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Pumo5g01181 1022 Gene3D Ribonuclease Inhibitor 318 620 IPR032675 -
Pumo5g01181 1022 SUPERFAMILY RNI-like 87 416 - -
Pumo5g01181 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 776 1020 - -
Pumo5g01181 1022 Gene3D Transferase(Phosphotransferase) domain 1 776 1020 - -
Pumo5g01181 1022 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Pumo5g01181 1022 SUPERFAMILY L domain-like 355 610 - -
Pumo5g01181 1022 FunFam LRR receptor-like serine/threonine-protein kinase EFR 318 626 - -
Pumo5g01181 1022 Pfam Leucine rich repeat N-terminal domain 41 79 IPR013210 -
Pumo5g01181 1022 PANTHER OS04G0122200 PROTEIN 74 217 - -
Pumo5g01181 1022 FunFam Leucine-rich repeat receptor-like protein kinase 39 196 - -
Pumo5g01181 1022 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Pumo5g01181 1022 Gene3D Ribonuclease Inhibitor 156 248 IPR032675 -
Pumo5g01181 1022 Gene3D Ribonuclease Inhibitor 41 155 IPR032675 -
Pumo5g01181 1022 Gene3D Ribonuclease Inhibitor 249 317 IPR032675 -
Pumo5g01181 1022 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 292 - -
Pumo5g01181 1022 Pfam Protein kinase domain 695 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01181 1022 ProSiteProfiles Protein kinase domain profile. 694 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01181 1022 Gene3D Phosphorylase Kinase; domain 1 674 775 - -
Pumo5g01181 1022 SMART serkin_6 694 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01181 1022 FunFam LRR receptor-like serine/threonine-protein kinase EFR 664 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01181 Pumo-Chr5 26581014 26584229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01181 41 1021 Receptor kinase-like Gene Family AT3G47570 44.051 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo5g01181 Pkinase 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01181 - - gmx:106794146 1777.3