Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01180 ATGCTCAATGGTACCATACCAAGACAAGTCCTTGCCTTGTCTTCTCTTTCAATTTACTTGGACTTGTCACATAATGCTTTGACAGGGTCTGTGCCTGTTGAAGTGGGCAAGTTGGTCAATCTTGCTCAGTTGGACCTCTCAGAGAACAAATTGTCTGGCATAATTCCATCCTCTCTTGGTAGCTGTATTAGTTTGGAATGGATACATTTGCAGGGTAACTTTTTTGAGGGAAACATTCCTTCAACTATGCAGAATTTGAGAGGCTTACAAGATATAGATCTGTCATGCAATAACTTGTCTGGGGAGATTCCTGAATTTCTTGGTGAGTTCAAAGTTCTTGAGCATCTCAATCTTTCTTACAATGATTTCAGTGGCAAAATACCAATGAATGGAATCTTCAAGAATGAAACTTCCTATTCAGTGTATGGAAACAGCAAGCTCTGTGGTGGTGTCCCAGAGTTAGATTTACCTGCATGCACCATAAAAAAAGCCTCTTCCTTCAGAAAATTTCATGACCCCAAAGTGATTATCCCTGTAATTATTGCACTTGTTTTTGTGCTCTTTCTATTTTGTTTTCTTGCAATCTTTATGGTAAAAAGAGCAAGAAAGAGAGCTTCTAGATCAACTACTACAAAGGATTTGGAATTGCAAATTTCATACTCAGAAATTGCAAAATGCACTGGTGGATTCTCCCAAGATAACCTGATTGGCTCAGGAAGCTTTGGTTCTGTGTACAGAGGAACCCTTTCAAGTGATGGATCAAGTGTTGCAGTTAAAGTATTAAATCTTCAACAAAGAGGAGCTTCAAAGAGCTTCATTGACGAGTGCCAAGTTCTAAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACAGCTATCTCAAGTGTAGATCATCAAGGTAATGACTTCAAAGCATTGGTGTTTGAGTTCATGCCAAAAGGAAGTTTGGAGGATTGGTTACATCCTGTAGATAATCTGCATAAAAAGACAAAGACTTTGTCATTTATCCAAAGACTGAATATAGCAATTGATGTTGCTTGTGCCCTGGAATATCTCCACCACTTTTGTCATACTCCAATTGTTCATTGTGATATAAAGCCAAGTAATGTGCTTCTTGACAATGATATGGTGGCACATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAACGGTTCTCCCCAACAATCAACCATGTCAGATGTCCTAAAGGGCTCTATTGGGTATATCCCTCCAGAATATGGAATGGGTGGCGAGCCTTCAGCACTGGGAGATATTTACAGTTATGGGATACTATTACTTGAGATGTTCACAGGAAAAAGACCAATAGATGAGATGTTTGAAGGTGTCAGCATGGGAATTCACCAGTTTACAGCCTTGGCTTTACCAAACCATGCGATGGAAATAATTGACCCTTTATTGCTCCCTAAGCAAGAATTTGATGATAGAGATGAAGAAGTTTCCACAGAGGAGAAAGCAATTTTGAGGGAGAATGAACCTGAAGTGATAAAGGAGGGTTGCTTGGTTTCAGTGTTGCAAATAGGAGTGTCATGCTCTTCAACTTCACCACGTGAAAGGTTGCCTATGACTGTGGTCGTCAACAAACTGCATGCAATTAAAAGCTCCTATTTTAATACTAATTAA 1656 0.3931 MLNGTIPRQVLALSSLSIYLDLSHNALTGSVPVEVGKLVNLAQLDLSENKLSGIIPSSLGSCISLEWIHLQGNFFEGNIPSTMQNLRGLQDIDLSCNNLSGEIPEFLGEFKVLEHLNLSYNDFSGKIPMNGIFKNETSYSVYGNSKLCGGVPELDLPACTIKKASSFRKFHDPKVIIPVIIALVFVLFLFCFLAIFMVKRARKRASRSTTTKDLELQISYSEIAKCTGGFSQDNLIGSGSFGSVYRGTLSSDGSSVAVKVLNLQQRGASKSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMPKGSLEDWLHPVDNLHKKTKTLSFIQRLNIAIDVACALEYLHHFCHTPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESNGSPQQSTMSDVLKGSIGYIPPEYGMGGEPSALGDIYSYGILLLEMFTGKRPIDEMFEGVSMGIHQFTALALPNHAMEIIDPLLLPKQEFDDRDEEVSTEEKAILRENEPEVIKEGCLVSVLQIGVSCSSTSPRERLPMTVVVNKLHAIKSSYFNTN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01180 551 FunFam LRR receptor-like serine/threonine-protein kinase EFR 201 311 - -
Pumo5g01180 551 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 37 156 - -
Pumo5g01180 551 PANTHER OS04G0122200 PROTEIN 2 548 - -
Pumo5g01180 551 SUPERFAMILY Protein kinase-like (PK-like) 209 540 IPR011009 -
Pumo5g01180 551 Gene3D Phosphorylase Kinase; domain 1 210 311 - -
Pumo5g01180 551 Pfam Leucine rich repeat 64 123 IPR001611 GO:0005515
Pumo5g01180 551 Pfam Protein kinase domain 231 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01180 551 SMART serkin_6 230 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01180 551 ProSitePatterns Protein kinases ATP-binding region signature. 236 259 IPR017441 GO:0005524
Pumo5g01180 551 Gene3D Transferase(Phosphotransferase) domain 1 312 550 - -
Pumo5g01180 551 Gene3D Ribonuclease Inhibitor 1 167 IPR032675 -
Pumo5g01180 551 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 312 551 - -
Pumo5g01180 551 PRINTS Leucine-rich repeat signature 86 99 - -
Pumo5g01180 551 PRINTS Leucine-rich repeat signature 41 54 - -
Pumo5g01180 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Pumo5g01180 551 SUPERFAMILY L domain-like 2 149 - -
Pumo5g01180 551 ProSiteProfiles Protein kinase domain profile. 230 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01180 Pumo-Chr5 26563301 26565839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01180 2 548 Receptor kinase-like Gene Family AT3G47570 45.961 8.22e-166 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo5g01180 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01180 - - gmx:100785230 979.933