Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01160 ATGAAAAAACACAGAATCGCGGAATCATTGATTCCTTCAACTCCATCTTCACACCCGATAACAATAACTATAACAACACCAATTCTCCTTCTTCTTCGAATCGAATGGAAGCTCCTCCTCCTCCTTCGGTTTCGAACGAGCGCGTGGCTATACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGGCGTTAGGGCAGAGGAATGGGGCTTGGTCGACGACGCGCTTCTCCACTACCGTAACGCGCACTCGATCCTCCTCGAAGCCAATTCAACTCCCGTTCCTTCCTACATCACTTCCAGTGAACAGCAGAAGGTGCAATCGTATCGCGAGAAGATATCCAAATGGCAGAGTCAGGTTTCTGAGAGATTGCAGACTCTCGCTAGACGAGTTGGTAGCTCATCTGCCAATCAGAGCACCTCAAAACTTGCCCAAACTGCTGCAGTTCCGATTAAGCCATCAAGTACTAGAAAAAATGTGTTACAAAAGCCCGCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGCATCTGGTGTAAATTATGATGACAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGACTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACAGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCTTTAACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCAACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGGAAGCTACTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCCAGTAGAGATCTAGAGAGGCTTGTAAAAGAGACCGAAGGTATATTTGTAGCTAAAATACACATTTTGTTTGTTCCGAGTTTGAGTCATGATGAGAAAGAAACTAGAAAGTTGAGATATTCTTTTCTTTTTCTTTTTTCTTTATTTTTTTTTTTCCTTTTTAAATATGACCATAATGCTTGTTATTCTTGGTTTGCAGGATATTCCGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTGAGGTACGAGGATTTTAAGAAGGCAATGACTATCATTAGGCCAAGCTTAAATAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAATGAGGAATTTGGCTCTAACTGA 1614 0.4182 MKKHRIAESLIPSTPSSHPITITITTPILLLLRIEWKLLLLLRFRTSAWLYKLKGYFDLATQEIAKGVRAEEWGLVDDALLHYRNAHSILLEANSTPVPSYITSSEQQKVQSYREKISKWQSQVSERLQTLARRVGSSSANQSTSKLAQTAAVPIKPSSTRKNVLQKPAQRTGQVNKVGSPKSSQASGVNYDDKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGIFVAKIHILFVPSLSHDEKETRKLRYSFLFLFSLFFFFLFKYDHNACYSWFAGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMTIIRPSLNKSKWEELERWNEEFGSN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01160 537 SMART smart 53 130 IPR007330 -
Pumo5g01160 537 Gene3D - 380 421 - -
Pumo5g01160 537 FunFam Spastin, putative 208 393 - -
Pumo5g01160 537 CDD MIT_spastin 53 131 - -
Pumo5g01160 537 FunFam AAA-type ATPase family protein 47 135 - -
Pumo5g01160 537 Gene3D - 47 136 - -
Pumo5g01160 537 SMART AAA_5 245 381 IPR003593 GO:0016887
Pumo5g01160 537 ProSitePatterns AAA-protein family signature. 351 370 IPR003960 GO:0005524|GO:0016887
Pumo5g01160 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 534 IPR027417 -
Pumo5g01160 537 Gene3D - 455 537 - -
Pumo5g01160 537 Pfam AAA+ lid domain 466 488 IPR041569 -
Pumo5g01160 537 PANTHER AAA DOMAIN-CONTAINING 111 536 - -
Pumo5g01160 537 Gene3D - 208 379 IPR027417 -
Pumo5g01160 537 Pfam ATPase family associated with various cellular activities (AAA) 249 379 IPR003959 GO:0005524|GO:0016887
Pumo5g01160 537 CDD RecA-like_spastin 214 377 - -
Pumo5g01160 537 MobiDBLite consensus disorder prediction 139 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01160 Pumo-Chr5 25985257 25991247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01160 244 425 Calmodulin-binding Proteins AT3G56690 34.783 5.24e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01160 K13254 - gmx:100780946 805.053