Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01147 ATGATACCAGCTGAGGGAAGTGTCAAGTGTGCGCGTTTTGGAGAGAGAAAGGGGGGGAAAAGAGCATGCGTTTTTGTTGAACGAATTCACGATCACGAGAGGAACGAGGACAAAAGAGGAAAAGTGAAAGCAGTTTTGAGGAAAAATAGTATAGGTAGTGGTGGTGGTAGTAGCAGTGGTAGTCCTTGTGGTGCATGCAAGTTTTTGAGGAGAAAGTGTATTCCGGGTTGTATCTTTGCTCCGTACTTTGATTCGGAGCAAGGTACACACCATTTTGCGGTGGTGCACAAGGTTTTTGGGGCTAGCAATGTGTCCAAGCTCCTTCTTAGCATTCCAGGGCATAGGAGGCTTGATGCAGTCATCACCATTTGTTATGAGGCACAGTCAAGGCTCAGAGATCCTGTTTATGGCTGTGTTGCCCAAATCTTTGCCCTTCAGCAACAGGTGGTGAACTTACAAGCAGAACTCTCTTACCTCCATGCCCACCTTGCTCAAATGGAGTTACCTCAACCACCACCACCTCCGCCGCAAACGACGGTGACACCACTGGGTTTCTCAATTGCCGACCTACCGTCTGCCACCACCGTGGCAGTGCCGGCCACCACCTATGATTTGTCTTCACTTTTTTTTGAACCAATGGGCCAAGCTTCATGGGCCATGCAACAGAGGGCCATAGACCCACGTCAATACATGGCTGCTGCTGCTCCATCAACCACCACCACCAGTGCTGACCCTCAAGCAGTGGCACTGGCACTGGCACATGACATTCCTATTAAGCATGAGTCTCCTCCATCACCTCCTGCCTCAAGCTCCAATGCCTCACCATCTTTATCGCTTTCTAAATGA 846 0.4976 MIPAEGSVKCARFGERKGGKRACVFVERIHDHERNEDKRGKVKAVLRKNSIGSGGGSSSGSPCGACKFLRRKCIPGCIFAPYFDSEQGTHHFAVVHKVFGASNVSKLLLSIPGHRRLDAVITICYEAQSRLRDPVYGCVAQIFALQQQVVNLQAELSYLHAHLAQMELPQPPPPPPQTTVTPLGFSIADLPSATTVAVPATTYDLSSLFFEPMGQASWAMQQRAIDPRQYMAAAAPSTTTTSADPQAVALALAHDIPIKHESPPSPPASSSNASPSLSLSK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01147 281 ProSiteProfiles LOB domain profile. 61 163 IPR004883 -
Pumo5g01147 281 PANTHER LOB DOMAIN CONTAINING PROTEIN 58 171 - -
Pumo5g01147 281 MobiDBLite consensus disorder prediction 254 281 - -
Pumo5g01147 281 Pfam Lateral organ boundaries (LOB) domain 62 160 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01147 Pumo-Chr5 25751405 25755783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01147 65 281 AS2 family AT2G45420 55.172 2.47e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g01147 LOB 2.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01147 K21994 - gmx:100790517 298.13