Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01145 ATGAGTAGCGGTAGCGGTAGTGGTAGTGGTGGTGGTAGTAGCAGTGGTAGTCCTTGTGGTGCATGCAAGTTTTTGAGGAGAAAGTGTATTCCGGGTTGTATCTTTGCTCCGTACTTTGATTCGGAGCAAGGTACACACCATTTTGCGGTGGTGCACAAGGTTTTTGGGGCTAGCAATGTGTCCAAGCTCCTTCTTAGCATTCCAGGGCATAGGAGGCTTGATGCAGTCATCACCATTTGTTATGAGGCACAGTCAAGGCTCAGAGATCCTGTTTATGGCTGTGTTGCCCAAATCTTTGCCCTTCAGCAGCAGGTAATATCATAG 324 0.4815 MSSGSGSGSGGGSSSGSPCGACKFLRRKCIPGCIFAPYFDSEQGTHHFAVVHKVFGASNVSKLLLSIPGHRRLDAVITICYEAQSRLRDPVYGCVAQIFALQQQVIS 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01145 107 ProSiteProfiles LOB domain profile. 17 107 IPR004883 -
Pumo5g01145 107 Pfam Lateral organ boundaries (LOB) domain 18 105 IPR004883 -
Pumo5g01145 107 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01145 Pumo-Chr5 25663281 25663604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01145 21 107 AS2 family AT2G45420 82.759 1.30e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g01145 LOB 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01145 K21994 - gmx:100790517 184.496