Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01143 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCCTATCACATGGCACCAAGGAGTGAAGCTCCAAGCCAGGGTCCTCCTGTTGTTCCTGAAGCAACAGCTGGAGCTATTGGTGTCTCACCAGTGAGTGTGGGATTGGATGGAACAGCAGCTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGGCCAGATGGGTTGAACACTATGGCATTGTCACCCATGCCAATCTCATCTTCAGCTCCATTTTCTAATGACTTCTCATCTGGGAAGCGGGGGAAACCGCGGGGGATGGAGTACAAGCTGCCAAAGAAAGTTGGAGTGGATCAATTTGGTGACTCTGTTGGTACAAACTTTATGCCCCATATCATTACGGTCAATACTGGTGAGGACATTACAATGAAGGTTATATCTTTTTCCCAACAAGGACCCCGTGCTATATGCATCCTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCCGGTGGGATGAGCGTTTCATTGTCAAGTCCAGATGGCCGCGTTGTAGGTGGTGGAGTTGCTGGTCTCCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCAAACAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGATTATGCACCAGCCACTGTCTCCCCTGCCATTGCAGTGTCTTCTGCGCCGCCCCCTACTAACGGTGAAAAGGAGGATGTCATGGGTGGACACCTACTGCACAACTCAGGAACAACCCTTAACTCAAGCCTTACTCCTCCCTTGGCCTTTCGTCGAGAAAACTGGGTTAACATGCACTCGATGACGGACTCGATGAAGTCGGCTACTGATATTAACATATCTCTTCCTGATTGTTAA 1008 0.4861 MEGREGMSSGVTVIGAEAPSAYHMAPRSEAPSQGPPVVPEATAGAIGVSPVSVGLDGTAAKKKRGRPRKYGPDGLNTMALSPMPISSSAPFSNDFSSGKRGKPRGMEYKLPKKVGVDQFGDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFLPNNQQDQKPKKPKSDYAPATVSPAIAVSSAPPPTNGEKEDVMGGHLLHNSGTTLNSSLTPPLAFRRENWVNMHSMTDSMKSATDINISLPDC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01143 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 309 IPR039605 GO:0003680
Pumo5g01143 335 MobiDBLite consensus disorder prediction 20 75 - -
Pumo5g01143 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 246 - -
Pumo5g01143 335 Gene3D - 129 260 - -
Pumo5g01143 335 FunFam AT-hook motif nuclear-localized protein 1-like 129 259 - -
Pumo5g01143 335 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Pumo5g01143 335 CDD DUF296 129 219 IPR005175 -
Pumo5g01143 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01143 Pumo-Chr5 25619715 25624650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01143 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.291 2.09e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01143 - - gmx:100777213 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01143 5 25619715 25624650 Pumo5g01143 5 25619715 25624650 ECH
Pumo5g01143 5 25619715 25624650 Pumo7g01017 7 18812981 18822466 PCT