Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01133 ATGGCAATCGTTAACAACAATGGAAGTGGAAGTGCTACTAGTACTCCTTTGACTAGTGCCTCTAACTCTAGCAACATGAGCAACAACAACGAAGAACAACAACACAACCTACATGGCATCATGCCACAGCTTCATTGTGAGAGAAAAATGGTGAGAAAAAGAATGGCTTCTGAGATGGAAGTTAACGTTCACGCCACTCCACTGCACAACTCTTCCTCCACCACAAGTGATTATCCTAGGTTTCCTCGTCGAAGCAGCACCAACATGAACATGTTGGAAAAAGGGTCCACCACCACAGCAACAACAACAACAGCACCAACGTTAGCCGCAGGTACATGTAGTAACATTAGCAATAATAATAATAATAATAGTAATAGTAGCTATCATTATAATAATAGTAGTAACAATAGTAATAGTGGTAATATTTCATCAAGAGATAACGTTGCTATTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGCACTCACCAACACCATCATCATTTCCAAGGACTCGTTGAGAGCCAGGACCAGCAGAACCCTGTGCCTGCAGTGTGTGGATTCTCAGGGTTACCACTTTTTCCATCTCAAAGCCAAAGAAACCGAGACAACACCAACAACACCAGCACCACCAACAACAACAACATAAGAAACAGTGGTGGAAATATTGTTGACGTGGTTGCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCGGCCGCAACAAGTGGTTGGATCGATGGTATACTGAAGGATCTCATTCACAGTTCCAATAGTGTTTCGATTCCTCAACTAATCAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTCGCAATGGTTCTTGAATACAGGTTGCGTCTTCTTCTCACTGAGTCTACCCCACAAAACAAAAGAGGAACAGAAGGGGTGCCTCTTCCTCCTTCTGTGTCCTCAGTGAAGCTCATGAATAACCGTGTGGATGGCCTTGTTCCTAATTTGCACTTCACAGATGCTTCAGGTGGTGCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCAAATGACTCACCACCACCATGATAACAACAACAGCAACACCAACACCAGCACCAACAACAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCAACACCACCACCACCACCACCCCATTATTCACCACCACAAGAGAAGCAGCCTCAAGAGGAAGATCTAGGAGCAACCAGCAGCGCTGAGGTGGCACTTTCAAGAAAGAAGAAAGAGGAGTTGCGGGAACAGAAGAAGAAAGATGAGGAGGGTTTGCATCTCCTCACTTTGCTGCTTCAGTGTGCTGAAGCTGTTTCAGCTGAGAATCTAGAAGATGCTAACAAGATGTTGCTGGAGATTTCTCAATTGTCAACACCCTTTGGCACTTCAGCACAGCGTGTGGCAGCTTATTTCTCAGAGGCCATATCAGCAAGGTTGGTGAGTTCATGTTTAGGGATATATGCCACTTTGCCACACACTCATCAAAGCCACAAGGTGGCTTCAGCTTTTCAAGTGTTCAATGGTATTAGTCCATTTGTGAAGTTCTCACACTTCACAGCAAACCAAGCTATTCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGATATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGGGCCCCTTATGTGAGGCTCACGGGGCTTGGTACCTCTATGGAAGCACTTGAAGCCACGGGGAAGCGTTTGTCTGATTTTGCAAACAAACTTGGCCTTCCCTTTGAGTTCTTCCCCGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTAGCAAAACCGAAGCTGTGGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTTGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTAAGCAGCACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTCGACTCTCTTGGGTCTAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAACTACTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAGCCAAAGTTTCACAACTGGAGGGAAAAGTTTCAACAGTGTGGGTTCAGAGGTATATCTCTAGCTGGTAATGCTGCCACTCAAGCTAGTCTACTCCTTGGTATGTTCCCATCAGAGGGCTATACCTTGGTGGAGGACAATGGCATTCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCCTTTCATAGTGGCACTGCCATTACCCATCACAACTAG 2487 0.4648 MAIVNNNGSGSATSTPLTSASNSSNMSNNNEEQQHNLHGIMPQLHCERKMVRKRMASEMEVNVHATPLHNSSSTTSDYPRFPRRSSTNMNMLEKGSTTTATTTTAPTLAAGTCSNISNNNNNNSNSSYHYNNSSNNSNSGNISSRDNVAIPNYPTVTVTTNYSTMLLPSSTTINSSGVAPNYSTHQHHHHFQGLVESQDQQNPVPAVCGFSGLPLFPSQSQRNRDNTNNTSTTNNNNIRNSGGNIVDVVASSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAMVLEYRLRLLLTESTPQNKRGTEGVPLPPSVSSVKLMNNRVDGLVPNLHFTDASGGAVVVNQHMLSNWGVPQMTHHHHDNNNSNTNTSTNNNPSVSLVTLPSPTPPPPPPHYSPPQEKQPQEEDLGATSSAEVALSRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSSTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSGTAITHHN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01133 828 MobiDBLite consensus disorder prediction 373 451 - -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 1 33 - -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 402 419 - -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 437 451 - -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 65 106 - -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 373 401 - -
Pumo5g01133 828 Pfam GRAS domain family 460 815 IPR005202 -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 124 146 - -
Pumo5g01133 828 ProSiteProfiles GRAS family profile. 450 815 IPR005202 -
Pumo5g01133 828 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 409 810 IPR005202 -
Pumo5g01133 828 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01133 Pumo-Chr5 25468502 25472795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01133 423 816 GRAS Transcription Factor Family AT3G54220 82.382 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo5g01133 GRAS 1.2e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01133 - - gmx:100806779 1310.05