Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01131 ATGGGCAATTGCGGAACCAGAGAGGAATCTGCCGTAGTTTCCAACGCTCAAGTTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCGAGTGCGAGGAGCCAGAATGCGGGTAGCGAGAAGAAGCACGGTCACGGTCACGGTCACAGGCACAATCTGAGCGAGTGCGCTTCGGATCTGAGCGAGTCGTGTTCGACACCGCGCGGTAACAGTAGCAGCAACACGCTGCTCTACACGCACGTGATCGCGTTCACGCTCTACGAGTTGGAGACCATAACGAAGAGCTTCCGCGGCGACTATATCCTCGGCGAGGGAGGCTTCGGCACCGTTTACAAAGGCTACATTGATGAGAACGTCAGAGTCGGACTCAAATCGCTCCCTGTAGCTGTCAAAGTGCTAAACAAAGAGGGTTTACAAGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTAGGGCAGCTGAGGCATCCTAATCTGGTGAAGTTGATTGGGTACTGCTGTGAAGATGATCACAGGCTGCTTGTGTATGAGTTCATGTTTCGAGGGAGTTTGGAAAATCACTTGTTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCTATCGCGACTTCAAAACGTCTAATATATTATTGGACTCCGACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGGGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACGGCTAGGAGTGACGTCTATAGCTTTGGCGTTGTTCTTTTGGAGCTTTTAACGGGAAGGAAATCTGTTGACAAGACCAGACCTGGAAAGGAACAGAGCTTGGTAGATTGGGCAAGACCAAAGCTCAATGACAAGAGAAAGCTCCTACAAATAATCGATCCTAGATTGGAGAATCAATACTCAGTAAGGGCAGCACAAAAAGCATGTAGCCTGGCTTATTATTGTTTGAGTCAAAATCCCAAAGCAAGGCCACTAATGAGTGATGTAGTTGAGACATTGGAGCCCTTGCAAAGTTCAAGTGTTGGTCCAGGTGAAGTCTCATTATCTGGATCAAATAGTGCGAGTGCTGGGCCTTTTGCCATGAACAAAATCTCTGACTACCGGATGCGTCACAAGTTTTCGAACAACGTTGGTCCTGGTGCTACTTGTCGGTCTCCAAACCCGAATTGCTCACCAGGTGGCCCAGCAACATTACGGGTCAGATGA 1326 0.4887 MGNCGTREESAVVSNAQVVQQLHHATSLGASARSQNAGSEKKHGHGHGHRHNLSECASDLSESCSTPRGNSSSNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGPGEVSLSGSNSASAGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGGPATLRVR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01131 441 FunFam Probable serine/threonine-protein kinase PBL8 179 390 - -
Pumo5g01131 441 Pfam Protein tyrosine and serine/threonine kinase 101 373 IPR001245 GO:0004672|GO:0006468
Pumo5g01131 441 Gene3D Phosphorylase Kinase; domain 1 58 178 - -
Pumo5g01131 441 Gene3D Transferase(Phosphotransferase) domain 1 179 383 - -
Pumo5g01131 441 SUPERFAMILY Protein kinase-like (PK-like) 69 374 IPR011009 -
Pumo5g01131 441 PANTHER OS01G0588500 PROTEIN-RELATED 63 377 - -
Pumo5g01131 441 MobiDBLite consensus disorder prediction 418 432 - -
Pumo5g01131 441 CDD STKc_IRAK 102 376 - -
Pumo5g01131 441 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01131 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Pumo5g01131 441 MobiDBLite consensus disorder prediction 30 53 - -
Pumo5g01131 441 ProSitePatterns Protein kinases ATP-binding region signature. 102 131 IPR017441 GO:0005524
Pumo5g01131 441 MobiDBLite consensus disorder prediction 418 441 - -
Pumo5g01131 441 FunFam Serine/threonine-protein kinase BIK1 63 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01131 Pumo-Chr5 25440185 25444277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01131 84 373 Glycoside Hydrolase AT3G07070 54.949 6.39e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo5g01131 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01131 - - gmx:102662348 875.544