Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01128 ATGAGAACAAGATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGTGGCTATATGTCTCCAGAGTATGCTATGTTTGGACAATTTTTTTATAGATTAGATGTTTACAGCTTTGGAGTTATGGTTCTTGAGATTGTTTGGAGACATTGGAGGGATGAAACACCATTGAACACATTGGATCCAAAATTAGAAGAAAACTATTCTAACATTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTTCAAGAAAACCCAGATGCTAGACCTTCAATGGTGACAATTGCTTCATATCTCAATGGTCATTCAATTGAGTTGCCATCTCCTAAAGAACCAACATTTTACTTGTACCACAGAATGGATCCAATTGTTGCAAATGAATCAAGTTCGAGGCAATCTACCAACAATTCCATACCATCCTCTATCAATGAGATTTGCGGTGCAGAGAAAACCACTGCCAACAGCACCTATCAGATGAACCTGAGGACCCTCCTCTCTTCCCTATCTTCCAACGCCACCATCAACACATTCTACAACGGCACGGTCGCCGGCAGAAACTCCTCGGACACAGTGTATGGATTGTTCATGTGCAGGGGTGATGTACTCTTACCCTCTCAACTCTGCAGACAGTGCGTGGTAAACGCAACCGAGAGATTATCTTCACCACAGTGTTCGCTGTCCAAAGAGGGTGTGATTTGGTACGACGAGTGCATGGTTCGGTATTCCAACGCCACTTTCTTCTCCACAGTGGACACATCTCCCTCATGGTCCTCGTTTAACGTGGCGAAAATCTCCTCCAACTCAACAAGCTTCACGAGTTTGTTGCCCTACGCCATGAACCTAACTGCACATGAAGCAGCCAATTCTAGTAACAGGTACTCCACAAAGAAAACAAACATTTCTGAGATTCAGACCCTATACTGTCTGGCTCAGTGCACACAAGACCTCTCACCCCAAAACTGCACAACCTGTCTTACTCAAGCAATAGGGAACCTCACACAGCTCAGTAACGGAAAGCAAGGAGGAAGAGTTGCGTTTCCCAGTTGTAACATTAGGTATGAATTGTACCCTTTCTACCGCGCCGCTGATGAGACACCAGAAGCACTCGTTCCTGAAACGAAATATCCACACAGGGATTCAGAATATTCAGAAGATCCTGGCTATATTTCCCACAACTGCTCAACAAACCAATACATGAACGACACTGCTTTCGAATCCGACCTCAGTAACCTCTTCTCTAACTTGTCTTCCAACGCCAACAGTGGCAGTAGATTCAAGATAACAATGGGAACACTGCAGGGCCTCTATGCGTGTCGTGGCGACCTTTCTCCATACTTTTGTGAAGAATGCGTCCGAAACGCAACGCAGAAGATAGCCTCGGAGTGTGGTTTGGCTACGGAGGGTGTAATTTGGTACAACCACTGCTGGCTTCGCTATTCCAATCGGTCCTTGGCCATGGAAACAAGTCCAAGATTTGTGAATTTGAATCTCAGCGACACCGATCCGGTGCAACACTCTGTTGCTAATAAATTATCCACTAAATTAGATGTGATGGCGTACGGCACTGGTGACAACTATCAAACTGGAACATTAAGATTGAATGATTTGCAAACGGTGTATATTCTTGCTCAATGCACAATGGATCTATCTAGCCATGCTTGCACTGTCTGCCTAGAGGATATGATTGGATCAGCAATTCCATGGGCTCGTTTGGGAAGCGTAGGTGGACAAGTTTTGTACCCTAGCTGTATTCTCCGCTTTGAATTGTTCCAGTTTTATGATCTCACGCCCACGACCACACCACCAACTAGTACCCCTCTTCCACCACCACCAGTACCACCAGTTGGACATGAAATTTCCACAATAGAGTCATTGCAATTCAATTTGGACATAATTGAAGCAGCAACAAACAACTTTTCTCACGAGAACAAGATTGGCAAAGGTGGATTCGGAGAAGTTTATAAGGGCATTCTTATAGATGGAAGACCTATAGCCGTAAAGAGGCTCTCAAGAAATTCTAAGCAAGGTGTAGCAGAGTTCAAAAATGAGGTTCTATTAATAGCCAAGCTTCAACATAGAAATCTAGTGGCATTCATAGGATTTTGTCTTGATGACCAAGAGAAAATACTTATCTATGAATACGTTCCAAACAAGAGTCTAGACTACTTCTTATTTGATACCAACCAAGAAAAGGTTTTGAGCTGGTCTGAGCGTCACAAAATCATAGAAGAGATTGCTCGAGGAATTCTATATTTACACAAACATTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATGTACTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAGAATTGTTGAAATAGATCAACAAGAAGGAAGTACAAACAGAATTATTGGAACATATGGCTATATGTCTCCAGAGTATGCCATGTTTGGACAATTTTCTGAGAAATCAGATGTTTATAGTTTTGGAGTTATGGTTCTTGAGATTGTTAGTGGAAAAAAGAATGTTGGTTCACATAATCCACATCGTGTTGCTGATGGTCTTCTAAAATTTGTTTGGAGACAATGGAGGGATGAAACACCATTGAACACATTGGACCCAAAATTAAAGGAAAATTATTCTAATATTGAAGTCATCAAATGCATTCAAATTGGTTTATTATGTGTTCAAGAAAATCCAGATGCTAGACCTACAATGGTGACAATTGTTTCATATCTTAGTGGTCATTCAATTGACTTGCCATCCCCTGAAGAACCAACGTTTTTCTTGTACCATAGAAAGGATCCAATTATTGCACACAAATCAAGGTTGAGGCTATCTACCAACAATTCCATACCATCCTCTATCAATGAAATGTCTATAAGTGAATTCTATCCTCGATAA 2898 0.4106 MRTRLAKVDLEKFISGYMSPEYAMFGQFFYRLDVYSFGVMVLEIVWRHWRDETPLNTLDPKLEENYSNIEVIKCIQIGLLCVQENPDARPSMVTIASYLNGHSIELPSPKEPTFYLYHRMDPIVANESSSRQSTNNSIPSSINEICGAEKTTANSTYQMNLRTLLSSLSSNATINTFYNGTVAGRNSSDTVYGLFMCRGDVLLPSQLCRQCVVNATERLSSPQCSLSKEGVIWYDECMVRYSNATFFSTVDTSPSWSSFNVAKISSNSTSFTSLLPYAMNLTAHEAANSSNRYSTKKTNISEIQTLYCLAQCTQDLSPQNCTTCLTQAIGNLTQLSNGKQGGRVAFPSCNIRYELYPFYRAADETPEALVPETKYPHRDSEYSEDPGYISHNCSTNQYMNDTAFESDLSNLFSNLSSNANSGSRFKITMGTLQGLYACRGDLSPYFCEECVRNATQKIASECGLATEGVIWYNHCWLRYSNRSLAMETSPRFVNLNLSDTDPVQHSVANKLSTKLDVMAYGTGDNYQTGTLRLNDLQTVYILAQCTMDLSSHACTVCLEDMIGSAIPWARLGSVGGQVLYPSCILRFELFQFYDLTPTTTPPTSTPLPPPPVPPVGHEISTIESLQFNLDIIEAATNNFSHENKIGKGGFGEVYKGILIDGRPIAVKRLSRNSKQGVAEFKNEVLLIAKLQHRNLVAFIGFCLDDQEKILIYEYVPNKSLDYFLFDTNQEKVLSWSERHKIIEEIARGILYLHKHSRLKVIHRDLKPSNVLLDENMNPKISDFGLARIVEIDQQEGSTNRIIGTYGYMSPEYAMFGQFSEKSDVYSFGVMVLEIVSGKKNVGSHNPHRVADGLLKFVWRQWRDETPLNTLDPKLKENYSNIEVIKCIQIGLLCVQENPDARPTMVTIVSYLSGHSIDLPSPEEPTFFLYHRKDPIIAHKSRLRLSTNNSIPSSINEMSISEFYPR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01128 965 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 139 245 - -
Pumo5g01128 965 Gene3D - 386 483 IPR038408 -
Pumo5g01128 965 Gene3D - 255 358 IPR038408 -
Pumo5g01128 965 Gene3D - 139 246 IPR038408 -
Pumo5g01128 965 Gene3D - 490 592 IPR038408 -
Pumo5g01128 965 CDD STKc_IRAK 645 911 - -
Pumo5g01128 965 Gene3D Transferase(Phosphotransferase) domain 1 715 918 - -
Pumo5g01128 965 Gene3D Transferase(Phosphotransferase) domain 1 11 107 - -
Pumo5g01128 965 SUPERFAMILY Protein kinase-like (PK-like) 625 942 IPR011009 -
Pumo5g01128 965 SMART serkin_6 639 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01128 965 SUPERFAMILY Protein kinase-like (PK-like) 16 135 IPR011009 -
Pumo5g01128 965 ProSiteProfiles Gnk2-homologous domain profile. 485 592 IPR002902 -
Pumo5g01128 965 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Pumo5g01128 965 Pfam Protein kinase domain 640 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01128 965 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 193 945 - -
Pumo5g01128 965 Gene3D Phosphorylase Kinase; domain 1 615 714 - -
Pumo5g01128 965 Pfam Salt stress response/antifungal 267 356 IPR002902 -
Pumo5g01128 965 Pfam Salt stress response/antifungal 526 588 IPR002902 -
Pumo5g01128 965 Pfam Salt stress response/antifungal 146 243 IPR002902 -
Pumo5g01128 965 Pfam Salt stress response/antifungal 393 481 IPR002902 -
Pumo5g01128 965 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524
Pumo5g01128 965 FunFam Cysteine-rich receptor-like protein kinase 25 254 358 - -
Pumo5g01128 965 ProSiteProfiles Protein kinase domain profile. 639 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01128 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Pumo5g01128 965 FunFam cysteine-rich receptor-like protein kinase 10 715 918 - -
Pumo5g01128 965 ProSiteProfiles Gnk2-homologous domain profile. 252 358 IPR002902 -
Pumo5g01128 965 ProSiteProfiles Gnk2-homologous domain profile. 386 484 IPR002902 -
Pumo5g01128 965 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 610 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01128 Pumo-Chr5 24707040 24723358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01128 383 965 Receptor kinase-like Gene Family AT4G05200 41.437 2.58e-161 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo5g01128 Pkinase 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01128 - - gsj:114397380 1202.96