Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01116 ATGGAAGGGAACAACAACGCTGACGTGTTCCAACCTTCTTCTCCCTCCGTGGGGCCCTCCTCTTCGCCCAATTCGAGGAGATACTCGGGGATTTTATCGGCCTCCAACATCATTCAGGCGCCGCTATCGGTCCTCCTGGAATATTCCGGCATCCTTCCGTCGCGCTCCTCCAACCACCACAGCCAGCCCAGCTCCGACGCCGTCAACAATGACGGCGAGGTTTCCATCAGGATCATCGGCCCCGCGGAACAGGAGCAGAGGGAGGAGCAACAATCCCCTCCTCCCGGATTGGTCGTCGGACTCTCGCATTCCCAGAACGACGCCGTTTTGCCCTCGGCATCGCCCCGCGGCGATGCCGAGGGTGCCGCGGCCACTGATGCCGCGGCCGCTGGAGGGGATGGTGTTGGGAGGGATTCGTCTTACCAGAGATATGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTAGTTGTCTTCATAAGGCAGCATTTGCAAGGGTTTTTTGTGACAATTTGGATTGCTGCTGTGCTTTTCAAGTCCAATGATATTCTGAGGAAACAAACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTTGCGCTTCATGTGGTTGGTGTTTACTGGTGGTATCAGAATGATGATCTAATGTATCCATTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCATGCGATTTTCATCATCATGGTCAATGATACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGGGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTTCTCCTGCTTTACCGTGCTTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTGCAATGAAGGCATTGTCGCGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACCTTAGGTCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1308 0.4878 MEGNNNADVFQPSSPSVGPSSSPNSRRYSGILSASNIIQAPLSVLLEYSGILPSRSSNHHSQPSSDAVNNDGEVSIRIIGPAEQEQREEQQSPPPGLVVGLSHSQNDAVLPSASPRGDAEGAAATDAAAAGGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAMKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01116 435 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 21 435 IPR044235 GO:0061630|GO:1904294
Pumo5g01116 435 CDD RING-HC_RNFT1-like 372 412 - -
Pumo5g01116 435 ProSitePatterns Zinc finger RING-type signature. 389 398 IPR017907 -
Pumo5g01116 435 ProSiteProfiles Zinc finger RING-type profile. 374 412 IPR001841 -
Pumo5g01116 435 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g01116 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 422 IPR013083 -
Pumo5g01116 435 SMART ring_2 374 411 IPR001841 -
Pumo5g01116 435 Pfam Zinc finger, C3HC4 type (RING finger) 372 415 - -
Pumo5g01116 435 SUPERFAMILY RING/U-box 366 417 - -
Pumo5g01116 435 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01116 Pumo-Chr5 24190399 24194552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01116 14 435 C3H Transcription Factor Family AT5G01960 73.023 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01116 - K22379 gmx:100818546 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01116 5 24190399 24194552 Pumo5g01116 5 24190399 24194552 ECH