Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01108 ATGCCGGCTCTAAGAGTTCATGGATATGCCTTGGCTGTTTCGTTTTGTCTTATCATCATCATAGCAGCCTCACAACGAACAGACCCTTCAGAAGTTAACGCGCTGATAGAGATCAAGAATAGTTTGATTGATTCTCAGAACAATCTTAAGGACTGGAATAAAGGAGATCCATGTGCAGCAAACTGGACTGGGGTTTGGTGTTTTGATAAGAAGGGGGATGATGGGTACTTCCATGTTCGTGAGATCTACTTAATGACAATGAATCTCTCGGGAAGTCTATCGCCTCAGCTTGGTCAGCTATCCCGTCTTGAGATACTGGATTTCATGTGGAACAATCTGACAGGCACAATACCAAAGGAGATTGGAAATATTAAATCATTGAAACTCTTGCTCCTGAATGGGAATAAGTTATCTGGTAGTTTACCAGATGAGCTTGGCAACCTTTCAAATTTGAATAGATTCCAAGTAGACGAAAACCAATTGTCAGGTCCTATACCAGAGTCATTTGCCAACATGACCAATGTTAGACACCTTCACATGAACAACAACTCATTTAGTGGTGAACTTCCCTCCACACTTTCGAAGCTATCAAATCTTGTGCACTTGCTTGTGGACAACAATAATTTATCCGGCCATCTTCCACCAGAATACTCCATGTTAACTGCATTGGCAATACTCCAGCTTGATAACAACAATTTCAGCGGGAGTAAAATTCCTTCTACCTATGCAAACCTAAACAGGCTAGTTAAATTAAGTCTACGAAACTGCAGTCTGCAAGGAGCTATTCCTGATTTCAGTTCGATACCCAGGCTTACCTATTTAGATCTTAGCTGGAATCAGTTGACTGGACCCATACCATCAAAAAAAGTGGCAGACAATATGACAACTTTTGATCTGTCCAATAATCTTCTCAACGGATCTATTCCTCGCTTATCATATCCTCATCTTCAAAAATTGTCACTTGCGAACAATTTACTGTCTGGGTCTATCCCTGGTAGCATATGGCAGAACATGTCCTTCGGTGCGAAAGATAAACTTACAATTGATCTCCATAACAACTCATTTGTGAATGTTTTGGGAAATCTGAACCCCCCGGCAAATGTTACCTTGAGGCTTTCTGATAATCCTATCTGCAAGAATTCTAACATACAAAATATTGGTCAATATTGTGGACCTGAAGGAGATATGGCAGCCCAAGACTCAACAAACTCAACTACTGTCTGTCCAGTTCAATCTTGTCCAGTGGATAACTTTTATGAATACGCCCCCTCTTCCCCAGTTCCTTGCTTTTGTGCAGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGAACTAGTTTTGAAGACTATATAACTAGGTCCTTACACTTAGATCTCTATCAACTATCAATAGATTCGGTTGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAATGATTCCCGTTCTACTATGTTCAATGAAAGCGAGGTCCGTCGCATTAAAGGCATATGTACATCATGGCACTTTCCTCGCACTGATTTCTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGCAAATTTGATTCTTGATTCGGACAAGAGAAAAATTAGTGTGGGCATAACAATTGCAGCTGTAATAGCAGCTGTTGCTTGTGTTATAGCAATATCTGCAATAATCATTCTCCTGATTACTAGAAGACATATGAAATACCAGAAAAAGATTTCCAGGAAACGAATGTCTACTAATATACCTATCAAAATAGATGGCATGAAAGCTTTTACCTTCAAAGAATTGGCTCATGCTACTAACAAATTTAATATCTCAAATAAGGTTGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAACTTTTGTGGCCATTAAGCGAGCAGAAGAAGGTTCCTTACAAGGACAAAAGGAGTTTCTGACTGAGATTGAGCTTTTGTCAAGGTTACACCATCGAAATCTTGTCTCGCTGATTGGATACTGTAATGAAGAAGGGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTAAAAAAACCAAGGGAAGCCTAAATTTTACTATGAGGTTGAGAATTGCAATGGGAGCAGCCAAAGGCATACTGTATCTGCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAAGTTTACAGCTAAAGTGGCCGATTTTGGACTGTCACGGCTTGTACCAGACTTAGATGAAGAAGGAACTGCTCCTAAATATGTGTCAACAGTTGTTAAAGGAACTCCAGGTTACCTGGACCCAGAATATTTGTTGACTCATAAGCTGACTGACAAATGTGATGTCTATAGCTTGGGAATTGTGTATCTAGAGCTTTTGACAGGCATGCAACCAATATCACATGGGAAAAACATTGTCCGCGAGGTTAATATGGCTCTTCAATCTGGCATAATATATTCCATCATAGACAGCAGAATGGGGTTATATCCATCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGGTTGATGTGGTGAGGGAACTGGAAGATATCATTGCAATGTTGCCTGAACCTGAAACTCTTTTCTCAGATGTTAGCTTAGACAGTTCTGGTAACATAGCACCCTCATCATCAGCATCAATATCAGGATCCCATGTGACAAGGGAGGAGCAACACATGTCCTCATATGTGTCAGGAAGTGATCTTGTCAGTGATGTCATTCCAACCATTGTTCCTCGCTGA 2874 0.4068 MPALRVHGYALAVSFCLIIIIAASQRTDPSEVNALIEIKNSLIDSQNNLKDWNKGDPCAANWTGVWCFDKKGDDGYFHVREIYLMTMNLSGSLSPQLGQLSRLEILDFMWNNLTGTIPKEIGNIKSLKLLLLNGNKLSGSLPDELGNLSNLNRFQVDENQLSGPIPESFANMTNVRHLHMNNNSFSGELPSTLSKLSNLVHLLVDNNNLSGHLPPEYSMLTALAILQLDNNNFSGSKIPSTYANLNRLVKLSLRNCSLQGAIPDFSSIPRLTYLDLSWNQLTGPIPSKKVADNMTTFDLSNNLLNGSIPRLSYPHLQKLSLANNLLSGSIPGSIWQNMSFGAKDKLTIDLHNNSFVNVLGNLNPPANVTLRLSDNPICKNSNIQNIGQYCGPEGDMAAQDSTNSTTVCPVQSCPVDNFYEYAPSSPVPCFCAAPLRIGYRLKSPSFSYFAPYRTSFEDYITRSLHLDLYQLSIDSVAWEEGPRLRMYLKLFPSYNDSRSTMFNESEVRRIKGICTSWHFPRTDFFGPYELLNFTLLGPYANLILDSDKRKISVGITIAAVIAAVACVIAISAIIILLITRRHMKYQKKISRKRMSTNIPIKIDGMKAFTFKELAHATNKFNISNKVGQGGYGNVYKGILSDETFVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGKSKKTKGSLNFTMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPDLDEEGTAPKYVSTVVKGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNMALQSGIIYSIIDSRMGLYPSDCLDKFLTLALRCCQDNPEERPSMVDVVRELEDIIAMLPEPETLFSDVSLDSSGNIAPSSSASISGSHVTREEQHMSSYVSGSDLVSDVIPTIVPR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01108 957 SUPERFAMILY L domain-like 44 385 - -
Pumo5g01108 957 Gene3D Transferase(Phosphotransferase) domain 1 696 903 - -
Pumo5g01108 957 SMART serkin_6 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01108 957 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Pumo5g01108 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Pumo5g01108 957 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 188 290 - -
Pumo5g01108 957 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Pumo5g01108 957 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Pumo5g01108 957 SUPERFAMILY Protein kinase-like (PK-like) 605 912 IPR011009 -
Pumo5g01108 957 Gene3D Ribonuclease Inhibitor 290 434 IPR032675 -
Pumo5g01108 957 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Pumo5g01108 957 PANTHER RECEPTOR-LIKE PROTEIN 55 38 895 - -
Pumo5g01108 957 Gene3D Phosphorylase Kinase; domain 1 590 695 - -
Pumo5g01108 957 Pfam Protein kinase domain 621 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01108 957 ProSiteProfiles Protein kinase domain profile. 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01108 957 Gene3D Ribonuclease Inhibitor 190 289 IPR032675 -
Pumo5g01108 957 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 187 - -
Pumo5g01108 957 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 908 - -
Pumo5g01108 957 CDD STKc_IRAK 626 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01108 Pumo-Chr5 24025798 24035303 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01108 5 904 Receptor kinase-like Gene Family AT5G01950 61.215 0.0 1106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pumo5g01108 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01108 - - gmx:100815005 1667.13