Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01106 ATGATGCCGACTCTAAGAATTCATGGATATGCCTTGCTTGTTTCATCTTGTTTTATCATCCTCATAGCAGCCTCACAAACAGATCCTTCAGAAGTAAATGCACTGATAGACATCAAGAAAAGTTTGATTGATCCCATGGACAATCTGAGGAGCTGGAATTCGGGTGATCCGTGTATGGCAAACTGGACTGGGGTTTGGTGTTCTGATAGGGAGGAGGCTGATGGTTACTTCCATGTCCAAAAGCTCTACTTAATGACTATGAATCTCTCGGGAAGTTTAGCACCCCAGCTTGGTCAGCTATCTCATCTTAAGATACTGTCTTTCATGTGGAACAATTTGACAGGCACAATTCCAAAGGAAATTGGAAATATTACATCATTGGAACTCTTGCTCCTAAGTGGGAATAAGTTATCTGGTACTTTACCAGATGAGCTTGGCAACCTTTCGAATTTGGATAGATTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATTCCAGAGTCATTTGGCAACATGGTCAAAGTTAAACATCTCCACTTGAATAACAACTCGTTCAACGATCAACTTCCATCTGAACTTTCAAAGCTGTCCATCCTTGTGCATTTGCTTGTGGACAACAATAACTTATCTGGTTACCTTCCATCAGAATTCTCTATGTTAGAACGGTTAAGAATACTCCAACTTGATAACAATAATTTTAGTGGGAATGGGATTCCTTCTACCTATACAAACTTTTCCGGTCTAGTAAAACTAAGTCTAAGAAACTGCAGTCTGCAAGGAGCTATTCCTGATTTCAGTTCAATAGCCAACCTTACCTATTTAGACCTTAGCTGGAATCAGTTTACTGGAGATATACCATCAAATAAACTCTCAGACAATATGACAACTATTGATCTATCCAATAATCATCTCAATGGATCAATTCCTCTAAGCTTCATATACCCTCATCTTCAAAAATTGTCACTTGAGAACAATTTACTGTCTGGATCCATCCCTGCTAGCATATGGGAGAACGTGCCCTTAAATACTAATGATAAACTTACAATTAATCTCCAAAACAACTTGCTATCGAAAGTTTTGGGAAATCTGAACCCCCCAGCAAATGTTACCTTAAGGCTTTCTGGCAATCCAATCTGCAATTCTAACACACAAAGTATTGGTCAATATTGTGGACATGTTGGAGATGCAGATGAAGTACACCAAATCCCAACAAATCCAACAACTGTCTGTCCAGTTCAAGATTGCCAAGCAGATAATTTCTATGAATTATATGCCCCCTCTTTCCCAGTTCCTTGCTATTGTGCAGCACCTCTGACAATTGAATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTCTTCCCTATATAAGTAGATTTGTATCATATGTATCTGAGTCCTTAAACTTAGACTACTATCAGTTATCAATAGATTCTTGGGAAGATGGACATCGTATTACCATGTATCTAAAACTATTTCCTTCGTACAATGATCCCTACCATATGTTCAATGCAAGCGAGGTTGATCGCATTAAAACCATGTTTACATCATGGCATTTTCCTCCCAATCATTTCTTTGGACCATATGAACTCCTGAACTTCACTCTTATTGGACCTTATGCAAATGCTAAAGATTCAGGGAGGAGTAAAACTAGTACAGTCATATTAGTTGCTGCTTTAATAGCAGCTGCTGCTTGTGTTTTGGCAACATCTGCCATAATCATTTTCCTAATTTCTATAAGAAATGGAAAATTTCAGCACATGATTTCCAGGAAATGTAAGTCCCCTAATGTATCTGTTAGACTAGACAGTGTGAAAGAATTTACTTTCAGAGAATTGGCTCTTGCTACTAACAATTTTAGCAGCTCAACTAAAGTTGGCCAAGGAGGTTATGGGAATGTTTACAAAGGCATTTTATCTGGAGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGGTTCCTTACAAGGCGAAAAAGAGTTTTTGACTGAGATTGAACTTTTATCAAGGTTACACCACCGAAATCTTGTCTCGCTGATCGGATACTGCAATGAAGAAGAGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTGAAAAAGCCAAGGAAAGACAAAATTTTGGTATGGGATTGAAAATGGCAATGGGTGCAGCCAAAGGGATACTATATCTTCATACAGATGCTAACCCTCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTCTGGACTCCAAATTTACAGCTAAAGTGGCTGATTTTGGACTGTCACGGCTTGCACCACTTGGAGAAGGAAGTAGTAGTACTAAATACGTGTCAACAGTTGTGAGGGGAACACCAGGTTACCTTGACCCAGAATATGTGTTGACTCAAAAGTTCACTGACAAAAGTGATGTCTATAGCCTAGGAATTGTGTTTCTGGAGCTTTTGACAGGCATGCAACCAATATCACGTGGGAAACACATTGTTAACGAGGTTAATGTGGCTTGTCGATCTGGCAGGATATATTCCATCATAGAGAGCAGAATGGGTTTATATCCATCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCCAAGACAATCCAGAGGAGAGGCCATCAATGCTAGATGTGGTGAGGGAACTAGAAGATATTATTACAATGCTATCAGTAAGTGAAGCTAGTTTCCCAGATGTTACCGTAGATAATTCAGGTGAAATGGCACCCTCATCATCTTTAGGATCTTACTCAGCAAGGGAGGACCAACACAAATATGCGTATGTGTCAGGGAGTAATCTTGTCAGTGGTGTCATTCCCACCATTGTTCCTCGCTAA 2859 0.3966 MMPTLRIHGYALLVSSCFIILIAASQTDPSEVNALIDIKKSLIDPMDNLRSWNSGDPCMANWTGVWCSDREEADGYFHVQKLYLMTMNLSGSLAPQLGQLSHLKILSFMWNNLTGTIPKEIGNITSLELLLLSGNKLSGTLPDELGNLSNLDRFQVDENQLSGPIPESFGNMVKVKHLHLNNNSFNDQLPSELSKLSILVHLLVDNNNLSGYLPSEFSMLERLRILQLDNNNFSGNGIPSTYTNFSGLVKLSLRNCSLQGAIPDFSSIANLTYLDLSWNQFTGDIPSNKLSDNMTTIDLSNNHLNGSIPLSFIYPHLQKLSLENNLLSGSIPASIWENVPLNTNDKLTINLQNNLLSKVLGNLNPPANVTLRLSGNPICNSNTQSIGQYCGHVGDADEVHQIPTNPTTVCPVQDCQADNFYELYAPSFPVPCYCAAPLTIEYRLKSPSFSYFLPYISRFVSYVSESLNLDYYQLSIDSWEDGHRITMYLKLFPSYNDPYHMFNASEVDRIKTMFTSWHFPPNHFFGPYELLNFTLIGPYANAKDSGRSKTSTVILVAALIAAAACVLATSAIIIFLISIRNGKFQHMISRKCKSPNVSVRLDSVKEFTFRELALATNNFSSSTKVGQGGYGNVYKGILSGETLVAIKRAAEGSLQGEKEFLTEIELLSRLHHRNLVSLIGYCNEEEEQMLVYEFMPNGTLRDWISGKSEKAKERQNFGMGLKMAMGAAKGILYLHTDANPPIFHRDIKASNILLDSKFTAKVADFGLSRLAPLGEGSSSTKYVSTVVRGTPGYLDPEYVLTQKFTDKSDVYSLGIVFLELLTGMQPISRGKHIVNEVNVACRSGRIYSIIESRMGLYPSDCLDKFLTLALRCCQDNPEERPSMLDVVRELEDIITMLSVSEASFPDVTVDNSGEMAPSSSLGSYSAREDQHKYAYVSGSNLVSGVIPTIVPR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01106 952 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Pumo5g01106 952 Gene3D Phosphorylase Kinase; domain 1 590 694 - -
Pumo5g01106 952 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 214 308 - -
Pumo5g01106 952 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 695 905 - -
Pumo5g01106 952 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Pumo5g01106 952 SUPERFAMILY L domain-like 238 388 - -
Pumo5g01106 952 ProSiteProfiles Protein kinase domain profile. 619 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01106 952 Gene3D Transferase(Phosphotransferase) domain 1 695 905 - -
Pumo5g01106 952 SUPERFAMILY Protein kinase-like (PK-like) 594 890 IPR011009 -
Pumo5g01106 952 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Pumo5g01106 952 CDD STKc_IRAK 625 893 - -
Pumo5g01106 952 SMART serkin_6 619 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01106 952 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Pumo5g01106 952 SUPERFAMILY L domain-like 26 287 - -
Pumo5g01106 952 Gene3D Ribonuclease Inhibitor 196 394 IPR032675 -
Pumo5g01106 952 Pfam Protein kinase domain 620 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01106 952 PANTHER RECEPTOR-LIKE PROTEIN 55 38 893 - -
Pumo5g01106 952 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Pumo5g01106 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Pumo5g01106 952 FunFam Leucine-rich repeat protein kinase family protein 583 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01106 Pumo-Chr5 23990014 24002367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01106 6 894 Receptor kinase-like Gene Family AT5G01950 59.000 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pumo5g01106 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01106 - - gmx:100798809 1657.5