Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g01105 | ATGGTTTCTGAAACCTCCCTCTCTTCTTCTAAACGCTCTCCAGCTACTCCTAAGTTCTGCAACTCATTCACTACTAGGATTTTTGCTGATGTTGCTGGTGACATTACAATTGTCGTTGATGGGGAGTCTTTTCTGCTACATAAGTTTCCCTTGGTGACTCTAAGTGGGAAGATCCGGAAGATGGTGGCTGAAGCCAAGGGTTCCAATGTTTCAAACTTGGAGCTCCTCAACTTTCCAGGGGGGCACCAGACATTTGAACTTGCCATGAAGTTCTGTTATGGGATGAATTTTGAGATTACAGCATTCAACGTTGCCCGGCTTCGATGTGCAGCAGAGTACCTAGAAATGACAGAAGAATACAGGGAGCAAAACCTCAGTCTCAAGAGCAGAGATTTATCTGAATGA | 405 | 0.4469 | MVSETSLSSSKRSPATPKFCNSFTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEAKGSNVSNLELLNFPGGHQTFELAMKFCYGMNFEITAFNVARLRCAAEYLEMTEEYREQNLSLKSRDLSE | 134 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g01105 | 134 | SUPERFAMILY | POZ domain | 22 | 118 | IPR011333 | - | |
Pumo5g01105 | 134 | PANTHER | OS12G0117600 PROTEIN | 30 | 128 | IPR043454 | - | |
Pumo5g01105 | 134 | Gene3D | Potassium Channel Kv1.1; Chain A | 8 | 126 | IPR011333 | - | |
Pumo5g01105 | 134 | ProSiteProfiles | BTB domain profile. | 33 | 101 | IPR000210 | GO:0005515 | |
Pumo5g01105 | 134 | SMART | BTB_4 | 33 | 125 | IPR000210 | GO:0005515 | |
Pumo5g01105 | 134 | Pfam | BTB/POZ domain | 34 | 118 | IPR000210 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g01105 | Pumo-Chr5 | 23953050 | 23954414 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g01105 | 8 | 129 | EF-hand Containing Proteins | AT2G47860 | 38.621 | 5.22e-25 | 96.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | TRAF | Pumo5g01105 | BTB | 5.9e-07 | CL0033 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g01105 | - | - | gmx:100801644 | 246.128 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g01105 | 5 | 23953050 | 23954414 | Pumo5g01105 | 5 | 23953050 | 23954414 | ECH |