Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01105 ATGGTTTCTGAAACCTCCCTCTCTTCTTCTAAACGCTCTCCAGCTACTCCTAAGTTCTGCAACTCATTCACTACTAGGATTTTTGCTGATGTTGCTGGTGACATTACAATTGTCGTTGATGGGGAGTCTTTTCTGCTACATAAGTTTCCCTTGGTGACTCTAAGTGGGAAGATCCGGAAGATGGTGGCTGAAGCCAAGGGTTCCAATGTTTCAAACTTGGAGCTCCTCAACTTTCCAGGGGGGCACCAGACATTTGAACTTGCCATGAAGTTCTGTTATGGGATGAATTTTGAGATTACAGCATTCAACGTTGCCCGGCTTCGATGTGCAGCAGAGTACCTAGAAATGACAGAAGAATACAGGGAGCAAAACCTCAGTCTCAAGAGCAGAGATTTATCTGAATGA 405 0.4469 MVSETSLSSSKRSPATPKFCNSFTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEAKGSNVSNLELLNFPGGHQTFELAMKFCYGMNFEITAFNVARLRCAAEYLEMTEEYREQNLSLKSRDLSE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01105 134 SUPERFAMILY POZ domain 22 118 IPR011333 -
Pumo5g01105 134 PANTHER OS12G0117600 PROTEIN 30 128 IPR043454 -
Pumo5g01105 134 Gene3D Potassium Channel Kv1.1; Chain A 8 126 IPR011333 -
Pumo5g01105 134 ProSiteProfiles BTB domain profile. 33 101 IPR000210 GO:0005515
Pumo5g01105 134 SMART BTB_4 33 125 IPR000210 GO:0005515
Pumo5g01105 134 Pfam BTB/POZ domain 34 118 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01105 Pumo-Chr5 23953050 23954414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01105 8 129 EF-hand Containing Proteins AT2G47860 38.621 5.22e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo5g01105 BTB 5.9e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01105 - - gmx:100801644 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01105 5 23953050 23954414 Pumo5g01105 5 23953050 23954414 ECH