Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01087 ATGGCTTCCCTTCTCTCTACAACTGCAACCACACTTCAACACAATCACACAATCTGCTTCTCTCCTCTGAAACCCACCACCCCAAATAACATTTCCTTATCAACAAACCGTTTCAAGAGTAACTCTGGAAAGTGCGATGCATTTTTTGGTAACATCCCCAAAGACTTGTTGGAGACCACTTTTCATGTAGACCAGTTTCCCATCTTCCAATCAGTGTTAGTGAAGTTTCAGAATGTAACTGAAGACTTATCAGAGGTGCAGAGGTGGGGGTTTGTGATACTTGCAGGGCTGACATGGGCTTATTTAACTGCTAGGCCGGGTGTTCTCGTTGGCGCCATCGATGCATTCCTTTTGGCTCCTATCCAACTGGTTTTGGACAGTTTATCTGGAAGGAGAAATCTGAAGAGGACTGATTTTCTTGTTGGAGATAAGCTAGGAGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGTTCCAAGGAATGTAGATGTGCAAGAGTGGATGCAGAAAGGTGGAAGAGGCAAGGTGACAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGAGCAGAGGAATTTGGTGAATTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACCAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGCCGCTCTCTTGCTGATTACATGGTAGATCAAAGATTCCCTTCAAACTTAGAGTCTATCATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGGAATGCATTGATCATCAAGCAAATAATGCGCAAGATCATTACATCTCTTAAGAAAATTCATGACACAGGCATAGTTCACAGGGATGTTAAGCCTGCCAACTTGGTGGTTACCAAACGGGGGCAGATTAAACTCATTGATTTCGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCGATTATACCCCTTTGGATCGTGACTACTGTCCCCCTGAACTATATGTGCTACCTGAAGAAACACTAAGTCTTCCACCAGAGCCTATTGCAGCTTTCCTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAGATAAGAACATATGGATATGATTTGAAGAAATGGAGGGCATCTACTCGCATGAGGTCTGACTTCCAAATTCTCGATAGTGACTCTAGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCCAAGAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCCGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAGGCAGCCGCAGTCCTTTCAAAATTAAGCTTAAGCACAAAGGGGAGCTCGTATGATATGGATATAATGGCATCCCATCTAAAGGCCAACTAA 1554 0.4292 MASLLSTTATTLQHNHTICFSPLKPTTPNNISLSTNRFKSNSGKCDAFFGNIPKDLLETTFHVDQFPIFQSVLVKFQNVTEDLSEVQRWGFVILAGLTWAYLTARPGVLVGAIDAFLLAPIQLVLDSLSGRRNLKRTDFLVGDKLGEGSFGVVYSGVLVPRNVDVQEWMQKGGRGKVTKLDAKSKDKVILKKVKVGIEGAEEFGEFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMVDQRFPSNLESIMFGRVLQGVDSSKRNALIIKQIMRKIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPDYTPLDRDYCPPELYVLPEETLSLPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIRTYGYDLKKWRASTRMRSDFQILDSDSSRGWDLATKLISKRGSQRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSTKGSSYDMDIMASHLKAN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01087 517 ProSiteProfiles Protein kinase domain profile. 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01087 517 SMART serkin_6 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01087 517 Gene3D Phosphorylase Kinase; domain 1 126 249 - -
Pumo5g01087 517 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01087 517 Gene3D Transferase(Phosphotransferase) domain 1 280 484 - -
Pumo5g01087 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Pumo5g01087 517 SUPERFAMILY Protein kinase-like (PK-like) 136 483 IPR011009 -
Pumo5g01087 517 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 37 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01087 Pumo-Chr5 23656844 23660626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01087 139 338 MAP Kinase Kinase Kinase AT3G13530 25.123 5.71e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Pumo5g01087 Pkinase 5.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01087 - - gmx:100795624 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01087 5 23656844 23660626 Pumo5g01087 5 23656844 23660626 ECH