Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01082 ATGGACAACCTCGGTACTAGTAGTCGTAGGAAAGCAATTGAGGAGCTTCTGAGAGGTCGTGATTGTGCCAAACAACTTAGAAGTGTCATCAATGGGAGTTGTGAAGATGGATCATCATCAGCAACCCCATTTGCTGAACAACTTGTGAAGGAGGTTCTCATGTCCCTCACCAACTCCCTCTTGTTCTTGAACAACCCCACTTTTGAAAAATCCCATGATGTCTCCAATGTTCAACAAGTTTGGGACTCTCCCAAATCCGAGGACTCTCAAGAGAGCAATTGTAAGAGCTCCACCATGAAGGAACGAAGAGGGTGCTACAAGAGAAGAAAAACTGAACAAACATGGGAGAAGGAGTCTGATGCTCCAATTGATGATGGCCATCAGTGGAGAAAGTATGGCCAAAAAGAGATCCTGAATGCCAAATTCCCAAGGAACTACTATAGGTGCAGTCACAAATTTGATCAAGGTTGCCAAGCAACAAAACAGGTGCAAAGAGTTCAAGAGGATCCAATCCTGTTCAAGACCACCTACTATGGCCACCACACTTGCAAGAACTTGGCAAACCCTGAGATCATACTTGACCCCGTGTCCCCTTCTGCCTCTTCCAAGTTCCTTAGCTTTGACAACTCCTTCCAACCGCATCCAAACAAGAATGCCCCTTTCTCTCATCTCCTTTCCCATCATCATTAG 690 0.4551 MDNLGTSSRRKAIEELLRGRDCAKQLRSVINGSCEDGSSSATPFAEQLVKEVLMSLTNSLLFLNNPTFEKSHDVSNVQQVWDSPKSEDSQESNCKSSTMKERRGCYKRRKTEQTWEKESDAPIDDGHQWRKYGQKEILNAKFPRNYYRCSHKFDQGCQATKQVQRVQEDPILFKTTYYGHHTCKNLANPEIILDPVSPSASSKFLSFDNSFQPHPNKNAPFSHLLSHHH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01082 229 SUPERFAMILY WRKY DNA-binding domain 121 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g01082 229 MobiDBLite consensus disorder prediction 79 105 - -
Pumo5g01082 229 ProSiteProfiles WRKY domain profile. 118 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g01082 229 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g01082 229 MobiDBLite consensus disorder prediction 79 93 - -
Pumo5g01082 229 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 200 IPR044810 GO:0003700
Pumo5g01082 229 Gene3D WRKY domain 107 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g01082 229 Pfam WRKY DNA -binding domain 124 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01082 Pumo-Chr5 23594958 23596928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01082 9 214 WRKY Transcription Factor Family AT3G56400 38.767 7.52e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g01082 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01082 - - gmx:100170682 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01082 5 23594958 23596928 Pumo5g01082 5 23594958 23596928 ECH
Pumo5g01082 5 23594958 23596928 Pumo7g01844 7 49130571 49132280 PCT