Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01075 ATGATGCAATTCAGCATGTGTGTGTTGTTTCTGATTCTCCTTGCACCGGTTATGTTGGTGTTTTCTGCGGACCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTGTTCAAGGCTGGTTTGGATGACCCCAAAAGGAAACTCTCTTCTTGGAATGAGGATGATAACAGTCCTTGCAACTGGGAAGGTGTGAAGTGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTCCTTGATGGCTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTATTGAGGTTGCAGTCTCTTCAAATTCTCTCACTTTCAAGGAACAACTTCACGGGGCCTATAAACCCCGATCTTCCTCGCCTTGGGAGTTTGCAGGCTGTGGACTTGAGTGACAACAATCTCTCTGGGGAGATTCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGGACAGTTTCATTTGCCAAGAACAACCTCACAGGTAAGATTCCCGAGTCCTTGAGTTCATGCTCCAATTTGGCAAGTGTTAACTTCTCCTCTAATCAGCTCCATGGGGAATTGCCTAATGGGGTGTGGTTCTTGAGGGGGCTACAGTCACTTGATCTGTCAGATAACTTGCTTGAGGGAGAGATTCCTGAAGGGATTCAGAATCTGTATGATATGAGGGAGTTGAGTCTTCAGAGGAACAGGTTTAGTGGAAGGCTTCCTGGGGATATTGGAGGGTGCATACTTCTGAAATCACTTGACTTGAGTGGTAATTTTCTCTCAGGGGAACTCCCTCAGTCAATGCAAAGACTCACTTCATGCACATCACTTAGTCTGCAGGGAAATTCATTCACAGGAGGCATTCCTGACTGGATTGGGGAATTGAAGAATCTAGAGGTGTTGGATCTTTCTGCCAATGGAGTCTCTGGTTGGATTCCAAAGTCATTAGGGAATCTGGACTCTTTGCATAGATTGAATTTGTCCAGGAATCAGTTGTCAGGAAACTTGCCTGATTCATTGGTGAACTGCACTAAGCTTTTGGCTCTTGACATCAGCCACAATCACTTTGCAGGCCATGTTCCTTCATGGATTTTTAGGATGGGTGTGCAAAGTATCTCTCTTTCTGGGAATGGCTTCAGCAAGGGCAATTATCCTGCACTTAAGTCCACACCTGCATCTTATCATGGTCTTGAGGTTTTGGATTTGTCATCCAATGCATTTTCTGGTGTGCTTCCATCTGGCATTGGGGGACTTAGTAGCCTGCAAGTCTTGAATATTTCCACCAACAATATCTCTGGTTCTATTCCTGTGGGTATAGGAGATCTTAAGTCTTTGTACATTATTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAACTTCACTCAGTGAGCTAAGGCTGCAAAAGAACTTCCTAGGTGGGAGAATTCCAGCCCAAATTGACAAGTGTTCATCTCTAACTTTTATGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTCACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCAGGAAGTTTACCCAAGGAGTTAACAAATCTTTCCCATCTTTTCTCATTTAATGTATCCTACAACCACCTTGAAGGTGAACTACCCGTGGGAGGCTTCTTCAACACCATCTCCTCCTCATCCGTCTCCGGTAACCCATTGTTGTGTGGTTCCGTCGTCAACCACTCCTGTCCATCTGTTCATCCCAAACCTATTGTCCTAAACCCCAATTCTTCTGGTTCCAACTCCAGCATTTCCTCACAGAACCATCGGCATAAGATCATACTAAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTTGTGGCTGTTACTGTCCTAAATATCCACGTGCGTTCCTCAATGGAACGTACAGCTGCTCCATTTGCATTTTCTGGTGGCGAGGACTATAGCGGTTCGCCGGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCACATAATCTTCTCAATAAAGAAAGTGAAATAGGCCGCGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGTGATGGGCATGCTGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGTGAAGTTAAAAAGCTTGGGAAAGTCAGGCACCCGAATCTCGTGGCACTCGAAGGTTATTATTGGACTTCATCCTTGCAGCTCCTTATTTACGAGTACCTTTCCGGTGGGAGTTTGCATAAACTTCTACATGATGATAACAGCAAAAATGTCTTCTCATGGTCACAAAGGTTCAAGATCATTCTTGGCATGGCAAAAGGGTTGGCCCATTTGCACCAAATGAACATAATCCACTACAATCTCAAATCAACCAATGTGCTGATTGATTGTTCTGGTGAGCCAAAGGTAGGAGACTTTGGCTTGGTGAAACTCTTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGCGCGCTCGGATACATGGCGCCCGAGTTTGCTTGCCGCACGGTCAAGATAACCGAGAAATGTGACGTATATGGTTTCGGGATCCTGGTGCTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGATGATGTGGTGGTTCTATGTGACATGGTGAGGGGTGCATTGGAAGAAGGCAAGGTGGAGCAATGTGTTGATGGGAGGCTCCTTGGTAACTTTGCAGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCCAACCGTCCAGATATGGCTGAGGTAGTCAACATATTAGAGTTAATCCAATGCCCTTCAGAAGGACAAGAGGAGTTAGAATGA 2907 0.4493 MMQFSMCVLFLILLAPVMLVFSADPGFNDDVLGLIVFKAGLDDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQSLQILSLSRNNFTGPINPDLPRLGSLQAVDLSDNNLSGEIPEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLASVNFSSNQLHGELPNGVWFLRGLQSLDLSDNLLEGEIPEGIQNLYDMRELSLQRNRFSGRLPGDIGGCILLKSLDLSGNFLSGELPQSMQRLTSCTSLSLQGNSFTGGIPDWIGELKNLEVLDLSANGVSGWIPKSLGNLDSLHRLNLSRNQLSGNLPDSLVNCTKLLALDISHNHFAGHVPSWIFRMGVQSISLSGNGFSKGNYPALKSTPASYHGLEVLDLSSNAFSGVLPSGIGGLSSLQVLNISTNNISGSIPVGIGDLKSLYIIDLSDNKLNGSIPSEIEGATSLSELRLQKNFLGGRIPAQIDKCSSLTFMILSHNKLTGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLFSFNVSYNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAVTVLNIHVRSSMERTAAPFAFSGGEDYSGSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFESEVKKLGKVRHPNLVALEGYYWTSSLQLLIYEYLSGGSLHKLLHDDNSKNVFSWSQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGQEELE 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01075 968 SUPERFAMILY Protein kinase-like (PK-like) 686 958 IPR011009 -
Pumo5g01075 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Pumo5g01075 968 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Pumo5g01075 968 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Pumo5g01075 968 SUPERFAMILY L domain-like 45 372 - -
Pumo5g01075 968 Pfam Protein kinase domain 686 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01075 968 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Pumo5g01075 968 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Pumo5g01075 968 Pfam Leucine rich repeat 484 543 IPR001611 GO:0005515
Pumo5g01075 968 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Pumo5g01075 968 Gene3D Transferase(Phosphotransferase) domain 1 762 966 - -
Pumo5g01075 968 Gene3D Ribonuclease Inhibitor 189 241 IPR032675 -
Pumo5g01075 968 Gene3D Ribonuclease Inhibitor 242 309 IPR032675 -
Pumo5g01075 968 SMART LRR_sd22_2 287 313 - -
Pumo5g01075 968 SMART LRR_sd22_2 434 457 - -
Pumo5g01075 968 SMART LRR_sd22_2 191 214 - -
Pumo5g01075 968 SMART LRR_sd22_2 506 532 - -
Pumo5g01075 968 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Pumo5g01075 968 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 386 955 - -
Pumo5g01075 968 SUPERFAMILY L domain-like 287 561 - -
Pumo5g01075 968 SMART LRR_typ_2 191 214 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 410 434 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 386 409 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 287 310 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 311 335 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 530 554 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 118 142 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 215 239 IPR003591 -
Pumo5g01075 968 SMART LRR_typ_2 506 529 IPR003591 -
Pumo5g01075 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 580 - -
Pumo5g01075 968 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Pumo5g01075 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
Pumo5g01075 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Pumo5g01075 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01075 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Pumo5g01075 968 Gene3D Ribonuclease Inhibitor 310 582 IPR032675 -
Pumo5g01075 968 Gene3D Phosphorylase Kinase; domain 1 675 761 - -
Pumo5g01075 968 CDD STKc_IRAK 691 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01075 Pumo-Chr5 23519663 23523963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01075 1 965 Receptor kinase-like Gene Family AT5G01890 62.860 0.0 1148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pumo5g01075 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01075 - - gmx:100790365 1812.73