Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01054 ATGGGTAACTACAGATTCAAATTATCAGATATGATCCCCAATGCCTGGTTTTACAAACTCAAGGACATGGGAAAAACAAGAAAACAAACCCAAACTCAGTCCAGGAAGAAAAAGCAACCTTCACCAGCCTCAACCACACAACCATCAAAACCAAAGCAACCCCACCAATACAATCTCAGAAAGTCTTACTACTTCACAAGGGAGCTTACCCCAAATGATAGAATCTACTCCTCACCAACAAATAACCAAAATGTCAAAGACACCAATTCCCCTGAACCCCCCAGAAAATCATCCAAACAAAGACTCAAGAGAAGAACTGCAAGGACTTCTTCTTCTCCTAAGCTTGTTGTTGTCACTAACAATAACAACTCCTCATCACCACATGATACCTCTGCTGAATCAGAGTACCCTGACCCAGAATTCAGAACTGACCGTGTTCTTCCCACCGAATCATTCGATGAAACGGTTCCTTGGGCCAACTCTTGTGCCTGCAGGCTACACTCCAACACCAAGGACATCATCATTGATGTAGACAACAATTCCATAGCCAGAAAAGATGATAAGCTAGAAGGGTATGAATGTGATTCCTTCTCAGACCTTGTGCTTCCACCAATTGTGACCAAGCCTGCAAAATTCAATGACTTGCTCAGTGATGCCAAGAAGAAAGAAACCAAACCCAGAAGCAAAATGGCTGCACATGAAGAACCAAACCTGAAGGGGCCTCTGAGAGTTAAAATTGTGAAGGAAGACACTGCATCAATGAAGGAACATAAGAACAACTATGGAAGGAGATTCTCTGTGAGTTCTCCAGGAGTGAGGCTTCGAATGAATTCGCCACGAATCGCAAGCCGGAAAATTCAGGCACACGGCCGGAGAAGCGTGTCCTCAGCCGCCCGGAGAAGCCTCTCGGATAGCTTTGCAATTGTGAAGTCATCACTGAATCCACAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTGGAGGATCTTCTTGCTTGCTACCTTTCTCTCAATTCAGATGAGTATCATGACCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATTAG 1116 0.4337 MGNYRFKLSDMIPNAWFYKLKDMGKTRKQTQTQSRKKKQPSPASTTQPSKPKQPHQYNLRKSYYFTRELTPNDRIYSSPTNNQNVKDTNSPEPPRKSSKQRLKRRTARTSSSPKLVVVTNNNNSSSPHDTSAESEYPDPEFRTDRVLPTESFDETVPWANSCACRLHSNTKDIIIDVDNNSIARKDDKLEGYECDSFSDLVLPPIVTKPAKFNDLLSDAKKKETKPRSKMAAHEEPNLKGPLRVKIVKEDTASMKEHKNNYGRRFSVSSPGVRLRMNSPRIASRKIQAHGRRSVSSAARRSLSDSFAIVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01054 371 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Pumo5g01054 371 Pfam Transcriptional repressor, ovate 312 368 IPR006458 -
Pumo5g01054 371 MobiDBLite consensus disorder prediction 24 58 - -
Pumo5g01054 371 ProSiteProfiles OVATE domain profile. 308 367 IPR006458 -
Pumo5g01054 371 MobiDBLite consensus disorder prediction 72 143 - -
Pumo5g01054 371 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 369 IPR038933 GO:0045892
Pumo5g01054 371 MobiDBLite consensus disorder prediction 35 58 - -
Pumo5g01054 371 MobiDBLite consensus disorder prediction 109 132 - -
Pumo5g01054 371 MobiDBLite consensus disorder prediction 72 91 - -
Pumo5g01054 371 NCBIfam uncharacterized plant-specific domain TIGR01568 307 369 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01054 Pumo-Chr5 23341999 23343526 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pumo5g01054 Ovate 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01054 - - gmx:100794572 647.891