Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01041 ATGGAGCAGAAGGGAAGTGTGCTTATGCAAAGATATGAACTTGGGAGATTATTAGGCCAAGGAACCTTTGCTAAGGTCTACCATGCTAGGAACCTTATAACTGGCATGAGTGTGGCCATTAAGGTAATTGATAAAGAAAAGATTTTGAAAGTTGGAATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGATTAATCAGACATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCACTAAAACCAAAATTTACTTTGTCATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGGTAGTCAAAGGAAGGCTCAAGGTGGATGTTGCTAGGAAATATTTTCAGCAACTGATAAGTGCAGTTGATTACTGCCATAGCAGGGGTGTGTGTCATCGAGATTTAAAACCTGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTTTCTGATTTTGGGTTGAGTGCCCTTGCTGAATCTAAGTGCCAAGATGGATTGCTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGCTATGACGGGATGAAAGCCGATATATGGTCATGTGGAGTAATCTTGTATGTTCTATTGGCTGGTCATCTTCCGTTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATTGGTAGAGGGGAATTCAAATTTCCTAAATGGTTTGCACCAGATGTTCGCCGTTTATTGTCCAGAATATTGGATCCAAACCCAAAGGCCAGGATATCAATGGCCAAGATTATGGAAAGTTCTTGGTTTAAAAAGGGGTTGGCGAAGCCTGCTATTACTGCGACTGAAAACGAAGAACTAGCTCCCCTGGATGCTGATGGATTATTTGAAGCAGTGCAAGAATGGTGGTCCTATTGCCGAGTCAAAGCAAGAACAGACTAA 930 0.4129 MEQKGSVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKVIDKEKILKVGMIDQIKREISVMRLIRHPHVVELYEVMATKTKIYFVMEHAKGGELFNKVVKGRLKVDVARKYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAESKCQDGLLHTTCGTPAYVAPEVINRKGYDGMKADIWSCGVILYVLLAGHLPFHDSNLMEMYRKIGRGEFKFPKWFAPDVRRLLSRILDPNPKARISMAKIMESSWFKKGLAKPAITATENEELAPLDADGLFEAVQEWWSYCRVKARTD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01041 309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Pumo5g01041 309 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Pumo5g01041 309 CDD STKc_SnRK3 11 265 - -
Pumo5g01041 309 PIRSF ILK 1 264 - -
Pumo5g01041 309 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Pumo5g01041 309 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01041 309 Gene3D Transferase(Phosphotransferase) domain 1 3 302 - -
Pumo5g01041 309 FunFam Non-specific serine/threonine protein kinase 2 288 - -
Pumo5g01041 309 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Pumo5g01041 309 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01041 309 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 276 - -
Pumo5g01041 309 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01041 Pumo-Chr5 23229036 23229965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01041 1 270 CBL-interacting serine-threonine protein kinases AT5G01810 78.519 6.61e-164 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo5g01041 Pkinase 5.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01041 K07198 - gmx:100811923 563.533