Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01027 ATGGGTATTTGTGAAGCCAAGTGGCAAAAGGCGTTTAGTTTGTTAGTGGGCATGGACAATGCAAATGGAATGGCAGATCCTGCTAGTTATGGGAGTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAAAAAGGGACTCAGTTAATAAAGTACAGTCGAAAAACCAAGCCAAAAGTTTGCCCATTCAGACTCTCTCTGGATGAAACAACACTAATTTGGATTTCTCATCACAAGAAGGAAAGGAAATTGAAATTATTTTCAGTTTCACGTATTATCCCTGGACAAAGAACTGTTGTCTTTAGAAGATATTTACAGCCAGAAAAGGATTATCTATCATTTTCACTTGTTTATAATAACGGGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGGCAGAGGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCTTACGCGCATTGGAAGTGAATTATTTGATGATGGTGATGATTTGATTCCAAACGGTCCTACTTTTGGAACAGCACTAGAATTTGCTATAAGCATTACTCGTAAGAGGGTCTCTTCTGATTTTGCTTCTCAACACGAGTCTCCATTGAATTTGGCAAGCACAGATGTGGGGTTAGAGCGTGCTAATAATAATATGCAAGCAAGAACAAGCATTGGAGATGGTTTTCGTGTCAGTGTGTCGAGTACACCAAGTGTTTCAAGCACAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGGGTTTCAGCTGATGGATTTTCCACTCAAGCCCCTTCCACAACAGATGTGTTGATTCCTAAGCCCTTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGAGGCACATTGCTTTGGTAACTAGGCAAGGTGAGGTTTTCACTTGGGGAGAAGAATGTGGGGGAAGACTTGGCCATGGAATTGATAGAGATTTTGGTAGACCTCAACTTGTGGAGTTTTTGGCAGTTACTAACATGGATTCTGTTGCATGTGGTGAGAATCACACATGTGCTGTGTCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTTGGCCATGGAACTGATGTTAGCCATTGGATACCAAAAAGGGTTAGTGGTCCTTTGGAAGGGCTTCAAGTTATATCCATTGCGTGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGGAAACTCTTCACCTTCGGTGATGGAACATTTGGTGTCTTGGGCCATGGAAATAGAGAGAGCGTTCCATATCCAAAGGAGGTGCAATTGTTAAGTGGATTGAAAACTATTAAGGTTGCATGTGGAGTGTGGCACACTGCAGCTATTGTAGAGGTTACTTTTCAATCTGGCTCAAATGTTTCATCTAGGAAGCTTTTCACTTGGGGAGATGGTGACAAATATAGGTTGGGACATGGAAACAAGGAAACATACCTTCAACCAACATGTGTGTCAACACTTATTGAATATAATTTCCACCAGATAGCATGTGGACACACCATGACTGTTGCACTCACTACATCTGGTCACGTATTTACTATGGGAAACACTGAAAATGGTCAACTAGGGAACCCTTTGGCTGATGGAAAAGTACCTATCCTAGTACAAGACAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCTCCAACATTGGTGGAGTCCTTAAAAGATAGGCATGTGAAGAACATCTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGGCACAATTGCTATAATTGTGGACTAGTGCATTGCCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCATTGGCTCCAACACCAGGAAAACCTCATCGAGTGTGTGACTCTTGTTACAATAAGCTTAAAGCTGTTGAGGCATGTGCAAGTTCCAATCTTAATAGAAAAATTACCACCACACCTCGCAATTCCATAGATGCTAGAGAAAGATTTGGCCAAGGAGAAATAAAGTCTGCTAGACTTATTTTGCCTCCTATCACAGAACCAGTCAAATATCATCAGATAATGGGTAATAAGCTAGGAAACAAATATGATTATCCTTCCATGGCTCCAACTGCACAAGTTCCATCACTTCTACAATTGAATGATATTGCATTTGGTAACTCAATAAGTTCAACTCAAAATGTTTTGAAGTCTGCTATAGCTCCTAATCCACCACCAACTCCACTTCTCAATTCAAGACCAGCATCTCCCTATGCAAGAAGGCCAAGCCCTCCACGTTCCAGAACTCCAGGATTTTCTAAAACTCTTATTGATAGTTTGAAGAAGTCAAATGAACTTTTGAATCAAGAAGTTTCAAAATTGCAAAACCAGATTCGAAGTTTGAAGCTACGAAATGACATGGAAATTCAAAAGCTCCAAAAAAATGTCACAGAAGCTACCTCCATTGCTGCAGAGGAATCCTCTAAGCATAAAGCAATGAAAGAATTTTTTGAGTCTACGGTAGATCAGATGAAGGAAATGATCGAGAAGCTGCCGCCAGAAGATTTAGATAGTGAAAATTGGAAAACCATGCTTACCCGAGCTGAGAATTTTCTAAAAGAAAATTTAGAATTTGAAACACAATCAAGTGTGAAGTCTCAACAACAAGATGCACCTAATACAGTACCTGACTCAAATAGTAGCTCTTCTAAATTGCAAGAACATAGAATAGAAGAAAATAATGAAACTGCAGGAGTTGACCCATCATCACAAGATGAAGGAAATGTTCTTCAAGAAAGCAATGGTTCATCTTTATCAAACAATGAAGCATCAATGCCTTCACAAAACTCCGAAAATGATTCAAAATCCCAAGACTCTTCAAGACCAGAAAAAGAAGGAGAAACGCAAGTCATTGAACAATTTGAACCTGGCGTATATGTGACACTAATAGTAAAGCCTGGTGGTGTCAAATCATTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGCTTAGGAAATATAATACTCCACAAGTTACAAATTCCGAAGGTACTGGGTCATCTAATACTCTACCACCACCACCACCACCTACAAAAGAAAATACTGAGGCAATGTCTTCCTAA 3342 0.4004 MGICEAKWQKAFSLLVGMDNANGMADPASYGSLERDIEQALIALKKGTQLIKYSRKTKPKVCPFRLSLDETTLIWISHHKKERKLKLFSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKDEAEVWFTGLKTLISTGKLTRIGSELFDDGDDLIPNGPTFGTALEFAISITRKRVSSDFASQHESPLNLASTDVGLERANNNMQARTSIGDGFRVSVSSTPSVSSTGSGPDDIESLGDVYIWGEVWADGVSADGFSTQAPSTTDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFGRPQLVEFLAVTNMDSVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKRVSGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVPYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGAHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEACASSNLNRKITTTPRNSIDARERFGQGEIKSARLILPPITEPVKYHQIMGNKLGNKYDYPSMAPTAQVPSLLQLNDIAFGNSISSTQNVLKSAIAPNPPPTPLLNSRPASPYARRPSPPRSRTPGFSKTLIDSLKKSNELLNQEVSKLQNQIRSLKLRNDMEIQKLQKNVTEATSIAAEESSKHKAMKEFFESTVDQMKEMIEKLPPEDLDSENWKTMLTRAENFLKENLEFETQSSVKSQQQDAPNTVPDSNSSSSKLQEHRIEENNETAGVDPSSQDEGNVLQESNGSSLSNNEASMPSQNSENDSKSQDSSRPEKEGETQVIEQFEPGVYVTLIVKPGGVKSFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYNTPQVTNSEGTGSSNTLPPPPPPTKENTEAMSS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01027 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 454 464 IPR000408 -
Pumo5g01027 1113 Pfam FYVE zinc finger 634 700 IPR000306 GO:0046872
Pumo5g01027 1113 SUPERFAMILY PH domain-like 36 147 - -
Pumo5g01027 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Pumo5g01027 1113 Gene3D - 209 473 IPR009091 -
Pumo5g01027 1113 Gene3D - 474 646 IPR009091 -
Pumo5g01027 1113 FunFam PH, RCC1 and FYVE domains-containing protein 1 221 469 - -
Pumo5g01027 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Pumo5g01027 1113 ProSiteProfiles PH domain profile. 115 148 IPR001849 -
Pumo5g01027 1113 CDD FYVE_like_SF 644 696 - -
Pumo5g01027 1113 SMART fyve_4 632 701 IPR000306 GO:0046872
Pumo5g01027 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 937 961 - -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 937 1030 - -
Pumo5g01027 1113 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1080 IPR013591 -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 1079 1094 - -
Pumo5g01027 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 415 464 IPR000408 -
Pumo5g01027 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 529 578 IPR000408 -
Pumo5g01027 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 480 526 IPR000408 -
Pumo5g01027 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 583 630 IPR000408 -
Pumo5g01027 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 362 411 IPR000408 -
Pumo5g01027 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 1062 1113 - -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 799 822 - -
Pumo5g01027 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 295 305 IPR000408 -
Pumo5g01027 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Pumo5g01027 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 1062 1078 - -
Pumo5g01027 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 706 IPR013083 -
Pumo5g01027 1113 ProSiteProfiles BRX domain profile. 1026 1081 IPR013591 -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 1014 1028 - -
Pumo5g01027 1113 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 974 1013 - -
Pumo5g01027 1113 Coils Coil 835 869 - -
Pumo5g01027 1113 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Pumo5g01027 1113 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Pumo5g01027 1113 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Pumo5g01027 1113 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Pumo5g01027 1113 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Pumo5g01027 1113 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Pumo5g01027 1113 SUPERFAMILY FYVE/PHD zinc finger 634 704 IPR011011 -
Pumo5g01027 1113 Pfam Pleckstrin homology domain 38 147 IPR001849 -
Pumo5g01027 1113 CDD PH_PLC_plant-like 35 148 - -
Pumo5g01027 1113 Gene3D - 35 153 IPR011993 -
Pumo5g01027 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Pumo5g01027 1113 SUPERFAMILY RCC1/BLIP-II 250 635 IPR009091 -
Pumo5g01027 1113 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 82 896 - -
Pumo5g01027 1113 MobiDBLite consensus disorder prediction 796 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01027 Pumo-Chr5 22987208 23000248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01027 1021 1081 Major Intrinsic Protein MIP AT1G31880 37.705 3.39e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01027 - - gmx:100779684 1887.46