Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00986 ATGTTTCAAGTGCAGGAACCAATTAAGAAACAAGACATGTGGAAATTCAATGAGTCTACAAAGCAAACTGATTTTTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTTCAATTCAGAGTTTTCCCTCAGAAATGGCAGAAGGAAAACCAGAAATACAAAGTAATTCAGTTCCTGGGTCTGGTTATTTTGACTACACTAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCAGAAGATGGGTTCAACTGGAGAAAATATGGCCAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTAGAGAAGTCTTTGGATGGACAAATTACTGAAATAGTATATAAGGGCCATCATAACCACCCAAAACCACAGTCTACAAGAAGAACACACTCTCAATCAACTCATCAACCTTCTTCATCTTGCACAAACTCAGGGATATCTGATCAATCAGTGGTGACCCTAGGAAATCCACAAATGGATCATTTCTCCATACAAGAAGATTCTTCAGCTTCTGTAGGAGAGGAAGAGTTTGAGCAAACATCCCAAACCAGTTATTCTAGAGGAGATGAAGATAACCTTGGACCAGATGCCAAAAGATGGAAGGGAGATAATGAAAACGATGGCTATTCTGCCTCTGGGAGTAGAACTGTTAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTCGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGCGTGCTGCACACGACATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATGTACCTGCTGCACGGGGTAGCGCAAGTTATAACATGAACAGAAATTCTGTGAACAGCAACATACCAGCGCCTATAAGACCATCGGCAGTGAACTGTTATTCTAGCTCATCAAGTTTCACAAATTCTCTTTATAATAATACTAGGCTTCCAGCAACTGGAAATCAAGAACCATTTTCACTGGACAAGTTCAAGAACCCTGGAAGTTTTGGCTATTCGGCTCTTAACAAATCAATGGGTTCATTTACCAATCATGCACAATACTCAGATGCTGCATACTCAAAGGCCAAGGATGAGACAAAGGATGACTCATTCCTTCAGTCATTTCTCTCAAAGGACTTCTAA 1260 0.404 MFQVQEPIKKQDMWKFNESTKQTDFSSERTATKSEYPSIQSFPSEMAEGKPEIQSNSVPGSGYFDYTNASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSTRRTHSQSTHQPSSSCTNSGISDQSVVTLGNPQMDHFSIQEDSSASVGEEEFEQTSQTSYSRGDEDNLGPDAKRWKGDNENDGYSASGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNSVNSNIPAPIRPSAVNCYSSSSSFTNSLYNNTRLPATGNQEPFSLDKFKNPGSFGYSALNKSMGSFTNHAQYSDAAYSKAKDETKDDSFLQSFLSKDF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00986 419 SUPERFAMILY WRKY DNA-binding domain 75 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 MobiDBLite consensus disorder prediction 180 232 - -
Pumo5g00986 419 ProSiteProfiles WRKY domain profile. 74 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 ProSiteProfiles WRKY domain profile. 243 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 MobiDBLite consensus disorder prediction 206 220 - -
Pumo5g00986 419 FunFam WRKY transcription factor 33 235 301 - -
Pumo5g00986 419 SUPERFAMILY WRKY DNA-binding domain 240 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 Gene3D WRKY domain 65 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 Gene3D WRKY domain 235 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 SMART WRKY_cls 248 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 SMART WRKY_cls 79 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 MobiDBLite consensus disorder prediction 1 83 - -
Pumo5g00986 419 MobiDBLite consensus disorder prediction 131 168 - -
Pumo5g00986 419 MobiDBLite consensus disorder prediction 141 168 - -
Pumo5g00986 419 MobiDBLite consensus disorder prediction 50 73 - -
Pumo5g00986 419 FunFam WRKY transcription factor 68 139 - -
Pumo5g00986 419 MobiDBLite consensus disorder prediction 18 41 - -
Pumo5g00986 419 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 332 IPR044810 GO:0003700
Pumo5g00986 419 Pfam WRKY DNA -binding domain 80 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 Pfam WRKY DNA -binding domain 249 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00986 419 MobiDBLite consensus disorder prediction 180 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00986 Pumo-Chr5 22101290 22103275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00986 74 415 WRKY Transcription Factor Family AT2G38470 54.722 1.58e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g00986 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00986 K13424 - gmx:100776837 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00986 5 22101290 22103275 Pumo5g00986 5 22101290 22103275 ECH