Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00981 ATGAATTTGCTGAACCTTCCATATCCTCAAGCCACCACTCCTTCTCCTTCCGTCGATTTCCACCATCTTCGCCGCAATCTACGCCCTCTCCCTCCGTCGAACACCACCACGCCTCGGCCAGACTCCGTCACTGCCCTCATCAACACCGCCGTCGGACACCGCCTCTCATACAATAAGGTAGATGCGCTGCACGATCTTGATGTCTTGAACCATCCCATTCTTAACCTAGTGTACCATTTGGACAACATTTGCTGGCCCAATTACTATGATGCATCCATGCCTCGATATGAAAGTTATCGTGTTGGGAAAATATCACTGTTGTCTACTTCCTTGTGTTGGCAATGCTGGCTCTGCTGGGCTAATGTACAAAAGGGGAAATATAGCTGTGCTGCTAATTGGATGCATGACAATCTCGAAGCAACATCATCAACATCTGTTGGCCCTAAATACTACAACCAGACCACCAATTTGCAGACTCAAAATGGTACTCACTTTGATTCAGAAGAGGCGGTGGATGCCTCATATACATTTTCTAACGAAGAAGATGAAGATGATCAACACACTCTTGGTAGTGTATCATTAGATTATGATGTGGAAGGAGATGAATCAGAGAAACTAGAGTCATATGCAGAGTTGAATGGAGCAATTAGAGCCAATTGTGATCCTAGAGTTGTACAGACTACCAGCGGAGTAGATATCTTTGATGATGGTTATTGGTGGCGGAAATACGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGTTGAGGAGCATAGTCACGAGCAAGAAAACAGGACACATTGTCTTCTTCGAGTTCCTTTGGTTGCAAATCTTCAAGGATAATAAGGAACTCATAGCTTCAGAATCAGTGCACCAAACACTGATGCATGTCTTTAATGGGTGTGACAATAAAATTGATAGCAAGGGAAAGCTATGGGCATAA 945 0.4434 MNLLNLPYPQATTPSPSVDFHHLRRNLRPLPPSNTTTPRPDSVTALINTAVGHRLSYNKVDALHDLDVLNHPILNLVYHLDNICWPNYYDASMPRYESYRVGKISLLSTSLCWQCWLCWANVQKGKYSCAANWMHDNLEATSSTSVGPKYYNQTTNLQTQNGTHFDSEEAVDASYTFSNEEDEDDQHTLGSVSLDYDVEGDESEKLESYAELNGAIRANCDPRVVQTTSGVDIFDDGYWWRKYGQKVVKGNPNPRLRSIVTSKKTGHIVFFEFLWLQIFKDNKELIASESVHQTLMHVFNGCDNKIDSKGKLWA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00981 314 SMART WRKY_cls 234 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00981 314 Gene3D WRKY domain 223 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00981 314 ProSiteProfiles WRKY domain profile. 229 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00981 314 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 154 255 IPR044810 GO:0003700
Pumo5g00981 314 SUPERFAMILY WRKY DNA-binding domain 226 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00981 314 Pfam WRKY DNA -binding domain 235 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00981 Pumo-Chr5 21850521 21860966 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00981 136 255 WRKY Transcription Factor Family AT4G26440 54.688 1.64e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g00981 WRKY 6.8e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00981 K18835 - gmx:100796545 199.519