Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00963 ATGAAGACTAATAACAACGTTTCTGGGGAGAGGAAATCACGGAAGAGACGCAGTGGTGGAAGTGATTCTGTGGAAGACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGCTCTAGAGAAAATGGGGTGGAAGTGATTCACAAAGTTCCTGCTAAAGGGTCAAGAAAAGGGTGCATGAGAGGTAAGGGTGGGCCTCAGAATTCTGATTGCAAGTACAGAGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCTGAAATTCGCGAACCTATCAATGGCAAGCTTGTTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAGGCAGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGCCCTTGTGCCCGTTTGAATTTTCCTGAGCCAATAGACTCTAATGGATCATCATCATCTAGTGGAAGTGATAAAAAATCACCAAGTGGTTCTTCAGAGAATGGTGGTGATGTTGCAAAAGCTGAGGAGTTGGAGGAAGTCACAACTGGCTTTGAACAGTGTCAAACAAGTGAAGAGTGTAAGGCAATAACTTTGAAGAATGTCAAGTCTGAAGAACATGGAGAAAGTGAAGGAATAGAGGGAGAATTGGAGGACGTTGTAAAAGACTCTGGCATAGGTGAAGAGGGTAATCACTTGCAGAAGGAGCCTATGGATATAGCCATGAATACAAGAGGTAACTATTGTAGCTCTTCTGATGCTGCTACTGAACATGAGATTCTGGTAAAGAGTGAAGAAACAAGAGAAGAATCAGTTAAATCTTTGAACTCTTGTGAGTTGAGCTGCAGCAACCATTGCCTTGGATATATGCATAATATGCTGCCAGATACCAATCCAAGACCAAATTCTGAGGCATCTATTGCAAAGAAACATACTGAGGAAGTAATTTCTGAAATCCTGGGACTATGTCACAGCAAGTGCTTGAAGATTAGTCATGGTCAGTCACCAAATGAGCAATATAGAAATGAACATTTTGATGACACGAGAACCAAGCTTAAGGGTTTGGAATGCAAGCTGAGAGCACATTCTATTCATTACAAGAATCAGGCACCAATAGTAGGGGACTCCAATCATCCTTCTATGCAGGGAATTCATCTTTTTGGTGGTGGCACAGTTGGACCAATTGAAAGCATGTCCCAAGTTGAGGCTTTGAACAACATCAACACAAACAGAAATTCACTACCTGGATTTAGTTCTGGCCATGGTAGGAAGTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTACCTTCCTGAGCATTGGAACAGTATGCAGTTTGCAGACTTGGAAGTTGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAAGAGCAGAAGTTACTTGATATATGCTTTCCACATGTAGGATCTTAG 1443 0.4213 MKTNNNVSGERKSRKRRSGGSDSVEDTLEKWKEYNRQQQLGSRENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKYRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPCARLNFPEPIDSNGSSSSSGSDKKSPSGSSENGGDVAKAEELEEVTTGFEQCQTSEECKAITLKNVKSEEHGESEGIEGELEDVVKDSGIGEEGNHLQKEPMDIAMNTRGNYCSSSDAATEHEILVKSEETREESVKSLNSCELSCSNHCLGYMHNMLPDTNPRPNSEASIAKKHTEEVISEILGLCHSKCLKISHGQSPNEQYRNEHFDDTRTKLKGLECKLRAHSIHYKNQAPIVGDSNHPSMQGIHLFGGGTVGPIESMSQVEALNNINTNRNSLPGFSSGHGRKLCDLSQQLHKLGGYLPEHWNSMQFADLEVGYDYSFLNPDYDFGLLEEQKLLDICFPHVGS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00963 480 MobiDBLite consensus disorder prediction 141 169 - -
Pumo5g00963 480 MobiDBLite consensus disorder prediction 141 164 - -
Pumo5g00963 480 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pumo5g00963 480 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Pumo5g00963 480 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Pumo5g00963 480 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Pumo5g00963 480 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Pumo5g00963 480 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Pumo5g00963 480 MobiDBLite consensus disorder prediction 7 28 - -
Pumo5g00963 480 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 276 - -
Pumo5g00963 480 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Pumo5g00963 480 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Pumo5g00963 480 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g00963 480 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00963 Pumo-Chr5 20586972 20589222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00963 14 190 AP2-EREBP Transcription Factor Family AT2G40340 51.397 3.20e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g00963 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00963 - - gmx:100500303 819.69