Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00961 ATGCTAGGTGCACATGTCGCGCTTCTCACTCTAAAGTCCGCCGTGGACGCCTCCGCCGCCGCCGCGTTCTCCGACTGGAACGACGGCGACTCCACGCCATGCCGGTGGTCCGGCGTCACGTGCGCGAACATCACCGGCCTCCCGGAGCCGCGCGTCGTCGGCGTCGCGCTCTCCGGCAAGGGCCTCCGCGGCTACCTCCCGTCGGAGCTCGGCACGCTCCTCTACCTCCGCCGCCTCAACCTCCACACCAACGCCCTCCGCGGCGCCATTCCGGCACAGCTCTTCAACGCCACCGCGCTCCACAGCGTCTTCCTCCACGGCAACAACCTCTCCGGCAGCCTCCCTCCCTCCGTCTGCACGCTCCCCCGCCTCGAAAACCTCGACCTCTCCGACAACGCCCTCTCCGGCGCCATCCCCGGCACGCTCCGGAACTGTTCCAATCTCCAGCGGTTAATCCTCGCCCGGAACAAATTCTCCGGCGATATTCCGGCGAGTCCGTGGCCGGAGATGAAAAACCTAGTCCAGCTCGACCTTTCATCGAACCTTCTAGAAGGTTCGATCCCGGACCAGCTCAGCGAACTTAAAACCTTAACCGGAACCCTAAACCTCTCTTTCAACCACTTATCTGGCAAAATTCCTAAGTCTCTCGGGAATTTGCCTGTTGCCGTCAGTTTTGATCTTCGGAACAATGATTTGAGCGGTGAGATTCCCCAAACGGGGTCGTTTTCGAACCAGGGCCCCACCGCGTTCCTCAACAACCCGAACCTGTGCGGGTTTCCTCTTCAGACGCCCTGCACAGGTTCGGCACCGAGTCAACCGGGACTCAGTCCTGGTTCTCGCGGGCCGGCGCACCGATCCGCGAAGAAGCTGAGCCCCGGTTTGATTATTTTAATCTCGGTGGCGGATGCCGCCGGGGTGGCCTTAATTGGGCTTGTGGTGGTTTATGTTTATTGGAAGAGGAAGGGCAAGTCCAATGGAGTGATGATTCTGAGGTGGAGGAGGGGGAGAGAGGAGAGAGGAGAGGGTGGGAAAGGTGAAGGGGATTTGGTGGCCATTGATAAGGGGTTTAACTTTGAGCTTGATGAGTTGTTGAGGGCTTCTGCTTATGTGTTGGGGAAGAGTGCGTTGGGGATTGTGTATAAGGTGGTGCTTGGGAATGGGGTGCCTGTGGCTGTGAGGAGATTGGGCGAGGGTGGAGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAAGCCATTGGCAAAGTGAAGCATCCCAACATTGTGAGGTTGAGAGCATATTATTGGGCTACTGATGAGAAGCTCTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGTCAACCATCTCCGAATCTTTCATGGTCAACCAGGCTGAAAGTCATCAAAGGAACAGCCAGGGGTTTGGCCTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGTGACATCAAACCCTCCAACATCCTCCTTGACACGGACTTCCAACCCCGCATTTCTGATTTTGGTCTTAACAGACTGATCAGCATCACAGGCAACAACCCCTCTTCTGGTGGCTTTATGGGAGGAGCTCTGCCTTACTTGAAGCCATCGCAAACAGAGCGAACTAACAACTACAAAGCCCCTGAGGCTCGAGTCCAGGGCTGCAGACCCACCCAGAAATGGGATGTGTATTCATTTGGAGTTGTGTTACTTGAATTGCTTACTGGGAAGTCCCCAGATTCTTCTCCGGCCGCTTCGACTTCCATGGAAGTCCCTGACTTGGTGAGATGGGTCAAGAAAGGGTTTGAACAAGAAAGTCCATTATCTGAAATAGTTGATCCGTTGATGCTCCATGAAGTGCATGCCAAGAAAGAGGTACTGGCTGTGTTTCATGTAGCACTACAATGCACTGAGGGAGACCCTGAAGTCAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAAAATTGGATGA 1986 0.5453 MLGAHVALLTLKSAVDASAAAAFSDWNDGDSTPCRWSGVTCANITGLPEPRVVGVALSGKGLRGYLPSELGTLLYLRRLNLHTNALRGAIPAQLFNATALHSVFLHGNNLSGSLPPSVCTLPRLENLDLSDNALSGAIPGTLRNCSNLQRLILARNKFSGDIPASPWPEMKNLVQLDLSSNLLEGSIPDQLSELKTLTGTLNLSFNHLSGKIPKSLGNLPVAVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQTPCTGSAPSQPGLSPGSRGPAHRSAKKLSPGLIILISVADAAGVALIGLVVVYVYWKRKGKSNGVMILRWRRGREERGEGGKGEGDLVAIDKGFNFELDELLRASAYVLGKSALGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVRLRAYYWATDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLKVIKGTARGLAYLHECSPRKFVHGDIKPSNILLDTDFQPRISDFGLNRLISITGNNPSSGGFMGGALPYLKPSQTERTNNYKAPEARVQGCRPTQKWDVYSFGVVLLELLTGKSPDSSPAASTSMEVPDLVRWVKKGFEQESPLSEIVDPLMLHEVHAKKEVLAVFHVALQCTEGDPEVRPRMKTVSENLEKIG 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00961 661 ProSiteProfiles Protein kinase domain profile. 365 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00961 661 ProSiteProfiles Leucine-rich repeat profile. 172 195 IPR001611 GO:0005515
Pumo5g00961 661 Gene3D Ribonuclease Inhibitor 4 166 IPR032675 -
Pumo5g00961 661 Gene3D Phosphorylase Kinase; domain 1 353 440 - -
Pumo5g00961 661 SUPERFAMILY L domain-like 7 262 - -
Pumo5g00961 661 FunFam Leucine-rich repeat receptor-like protein kinase 172 267 - -
Pumo5g00961 661 FunFam Os07g0541700 protein 446 527 - -
Pumo5g00961 661 CDD STKc_IRAK 371 660 - -
Pumo5g00961 661 SMART LRR_typ_2 170 194 IPR003591 -
Pumo5g00961 661 SMART LRR_typ_2 73 97 IPR003591 -
Pumo5g00961 661 SMART LRR_typ_2 121 144 IPR003591 -
Pumo5g00961 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 143 660 IPR046959 -
Pumo5g00961 661 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Pumo5g00961 661 SUPERFAMILY Protein kinase-like (PK-like) 370 657 IPR011009 -
Pumo5g00961 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Pumo5g00961 661 FunFam Leucine-rich repeat receptor-like protein kinase 348 440 - -
Pumo5g00961 661 Pfam Leucine rich repeat N-terminal domain 7 41 IPR013210 -
Pumo5g00961 661 Gene3D Transferase(Phosphotransferase) domain 1 441 660 - -
Pumo5g00961 661 Gene3D Ribonuclease Inhibitor 169 265 IPR032675 -
Pumo5g00961 661 SMART serkin_6 369 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00961 661 FunFam Leucine-rich repeat receptor-like protein kinase 3 164 - -
Pumo5g00961 661 Pfam Protein kinase domain 370 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00961 Pumo-Chr5 20566952 20574016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00961 6 660 Receptor kinase-like Gene Family AT1G67510 66.667 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo5g00961 Pkinase 4.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00961 - - gmx:100795021 1181.78