Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00948 ATGACTCTCCCTTCTGGGGATTCTGGTGTTCCAGCTAAAAGACCCGTATATCAGACAAAGAAGGTGAAACCGAACAATCGTAATCAGAGTGGTGCTGAAGGTGTTGAAGCAAAGGAGACTGACACTGATGTAGCTTCGGAGGAACGGGAAAAGCTTGAAGAAGAAGTGGAGTCGACACGGGTGGATGACAAAGTTCAACTTCCTGTGGCTGTTGAAGAGGATGAATGGGATGCAAACTGCTGGGATGATCTTAATCTGAATGCCAAAGGCGCTTTTGCTGATGAAGAGGCTGACTCGGAGCCTAAACCTATTGTCAGAAAGGAGATTAAAAAGGCTGTTCTTACTCAGAATGCTGGTGCTACTAATAAAACTATTTCTAAGCCTGTGGCTGAAGAAATTGAAAATGGAAAGCAGGCTACTGCTGTGGTTGTGGACACAAATAAAAAGCATGATCCTGACTTGAACAGGGAACCCAGAAAGTCTGCTGTGCCAAGGGAACTGCCACAGTCTGCCGTGCCTCCTAAGCCTAGAGATGAGAACCTCCGCTCTCCAATTTGCTGTATCATGGGGCATGTAGATACTGGCAAAACCAAGCTGCTAGATTGTATTCAAGGTACTAATGTTCAGGAGGGTGAGGCTGGCGGTATCACACAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATTCGCGGAAGAACGAAGCAACTGAAGGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGACACGAGTCATTTACTAACCTGAGGTCACGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGAGTTACAGCAACAAACAATAGAATCACTAAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCATTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATTCTCCAATTGTTAAAGCAATGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCACTAAGATTATTACTCAATTCAAAGAACAGGGGCTGAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCCGATTTGTTATTACTATTGGTTCAATGGACCCAAAAAACAATGGTTGAGAAACTTGCATACAGTGAAGAAGTTCAGTGTACTGTCTTAGAAGTGAAAGTAGTTGAAGGCCACGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCACGAAGGAGAACAAATAGTTGTCTGTGGAATGCAGGGGCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTCCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGGCTTGAACATGCCATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAAGCAGCCAAGGAAGATATGCGGTCGGTCATGAGCAGGATTGACAGGACCAGTGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGAAGCATTACTGGAGTTTTTAAAAACTCCAGAAGTGAGTATCCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAGAAAGAGTATGCAGCAATATTGGCATTTGATGTCAAAGTTACTCCTGAGGCTAGGGAACTGGCAGATGAATTGGGCGTGAAGATATTTGTTGCTGATATCATTTATCATCTGTTCGGTCAATTTAAAGCTTATATTGACAACATTAAGGAGGAGAAAAAGAGAGAAGTTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTGCAAAGATTGGGACTCCTATTTGCATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCTGTTGATTATGCAGAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAAAAGATGTATGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATACTCAAAGCTAATTATCGGGATGATCTATCTAAGGAGGAACGGAGGCTGGTTGTGAAATTGAAGAATCTTTTCAAGATACTATGA 2322 0.4165 MTLPSGDSGVPAKRPVYQTKKVKPNNRNQSGAEGVEAKETDTDVASEEREKLEEEVESTRVDDKVQLPVAVEEDEWDANCWDDLNLNAKGAFADEEADSEPKPIVRKEIKKAVLTQNAGATNKTISKPVAEEIENGKQATAVVVDTNKKHDPDLNREPRKSAVPRELPQSAVPPKPRDENLRSPICCIMGHVDTGKTKLLDCIQGTNVQEGEAGGITQQIGATYFPAENIRGRTKQLKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHELQQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKAMKQQTKDVQNEFNMRLTKIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLAYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEAAKEDMRSVMSRIDRTSEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKKEYAAILAFDVKVTPEARELADELGVKIFVADIIYHLFGQFKAYIDNIKEEKKREVADEAVFPCVLKILPNCIFNKKDPIVLGVDILEGIAKIGTPICIPSREFIDIGRIASIENNHKPVDYAEKGQKVAIKIVGSNPEEQQKMYGRHFEIDDELVSHISRRSIDILKANYRDDLSKEERRLVVKLKNLFKIL 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00948 773 Pfam Translation-initiation factor 2 508 621 IPR023115 -
Pumo5g00948 773 FunFam Eukaryotic translation initiation factor 5B 523 629 - -
Pumo5g00948 773 CDD IF2_aeIF5B_IV 644 739 - -
Pumo5g00948 773 PRINTS GTP-binding elongation factor signature 265 276 IPR000795 GO:0003924|GO:0005525
Pumo5g00948 773 PRINTS GTP-binding elongation factor signature 249 259 IPR000795 GO:0003924|GO:0005525
Pumo5g00948 773 PRINTS GTP-binding elongation factor signature 301 310 IPR000795 GO:0003924|GO:0005525
Pumo5g00948 773 PRINTS GTP-binding elongation factor signature 185 198 IPR000795 GO:0003924|GO:0005525
Pumo5g00948 773 MobiDBLite consensus disorder prediction 146 163 - -
Pumo5g00948 773 NCBIfam small GTP-binding protein domain 186 312 IPR005225 GO:0005525
Pumo5g00948 773 Gene3D Translation factors 636 772 - -
Pumo5g00948 773 Gene3D - 176 403 IPR027417 -
Pumo5g00948 773 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 506 636 IPR036925 -
Pumo5g00948 773 Gene3D - 525 629 IPR036925 -
Pumo5g00948 773 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 11 769 IPR015760 -
Pumo5g00948 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 472 IPR027417 -
Pumo5g00948 773 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 181 397 IPR000795 GO:0003924|GO:0005525
Pumo5g00948 773 Gene3D Translation factors 404 524 - -
Pumo5g00948 773 CDD IF2_eIF5B 184 394 - -
Pumo5g00948 773 FunFam eukaryotic translation initiation factor 5B 404 523 - -
Pumo5g00948 773 MobiDBLite consensus disorder prediction 1 66 - -
Pumo5g00948 773 Pfam Elongation factor Tu GTP binding domain 185 393 IPR000795 GO:0003924|GO:0005525
Pumo5g00948 773 Coils Coil 35 62 - -
Pumo5g00948 773 SUPERFAMILY Translation proteins 640 771 IPR009000 -
Pumo5g00948 773 CDD aeIF5B_II 405 515 - -
Pumo5g00948 773 FunFam Eukaryotic translation initiation factor 5B 175 403 - -
Pumo5g00948 773 MobiDBLite consensus disorder prediction 146 179 - -
Pumo5g00948 773 MobiDBLite consensus disorder prediction 34 66 - -
Pumo5g00948 773 Pfam Elongation factor Tu domain 2 420 495 IPR004161 GO:0005525
Pumo5g00948 773 FunFam Eukaryotic translation initiation factor 5B 636 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00948 Pumo-Chr5 20322670 20331027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00948 3 772 Eukaryotic Initiation Factors Gene Family AT1G76810 70.551 0.0 1084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00948 K03243 - gmx:100814875 1330.08