Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00941 ATGATGCAGCCAGAGGATCTGCAATCCGCATGGCCATTCTTTGAAGACATGAACTCAACTTTTGATCAAGGTGTTGAGTCCTATGGCTTCACCACCATGTATGGCCATGTTGGTGATTGTGGACCTTATGGCTTCACTTTGGATGACCATGTTGGTGATTGTGGACTCAATACTCTATTGAGCACTCTAGAGGATTCCACTTCTGAAATTTGTTCCATCCCCTTTCCTTTCTCCCCCATAATATTCCCCAATGATCATATTCATATCCAATACCCAATCAATGAAGAAACCATGCAACTTCCATCATTGATGGAATTGGATGATTTTGACTCCATCTTGGATACTCAAATTATTAGTATTCAAGGTCATGGAGAAAGTGAAGGGAGCTTCTTCCCTTCACAGAATTTGTCAAGTGAGGTGGAAAATCCATGGAGTCCTACCCCATCTGTGAGGTCAGAGTTGTCCACAAATCAAACATCACCATTGACTTTACCACAAGAAAACATGGAAATTGAAAACCAAGTGAGCCTTCCACACTTGCTGAAGGCCTATGGAGAGGCCTTGGAGCAAGGACAAAAAGCACTAGCAGAAGTGATTTTGAGGTGCATAAGCCAGAAAGCTAGCCCACTTGGTGAGTCTCTAGAGCGCCTTGCATTCTACTTGTCTCAAGGCATGGCCAATCATGGAGACTATCTAAAAGGTGAGGCCTTCAAGAACTTTGAGGCTGCTCTGAGGGCACTCTATCAAGGCCTCCCAATTGGGAAAATTGCTCACTTTGCAGCTGTTTCAGCAATTCTTGAAGCCATGCCACAAGATTGTGATGTTGTGCACATAGTGGACTTTTGTGTTGGACGTGGTGTTCAATGGCCTACAATGATTGAGGCTGTTGCACACATGCACAAAACATTGAAATTGACATCAATCAAATGGGGTGGTGAGGGCCCTGAATGTGTTTCTAGTCCATGCAATTTTGAGGAAACTAGAAGGCAGCTCTATGAGCAAGCCAAATCCTGTGGTTTGAAGTTGAAGGTAGAGGAGAAAGGAGTGGAGGAATTGGTTAGTGAGATTAAGAAAATGAACAAAAGGGGTGGGAGGGGAGAGTTTTTGGCCTTCAATTGCATGATTGATCTGCCACATATGGGAAAAGTAAGGAGCAGAAAACATGCCTTAGAGTTTCTAAGGGTAGCAGAGGATTTGATCAACACCTCTGGCAACAGGGGAATTATCACTTTTGGGGATGGGGGTGCTTTTGAGAAAGTAAAAAACGACATGAATTTCAGGTCATTTTTTGATGGACATTTGGTGCATTACCAAGCCTTGTTAGAATCAATTGAGTCACATTTCCCAACTCATTTCTCAGAAGCAAGAATTGCCATGGAGCAATTATTTTTGCAACCTTGCATCTCTTCTCTTGATTGGTTACAAACATGGGAGGAGATGATAAGGAGTGGCCATCTTGAGGCACAGATTAACTTAGAGGGATGCCAATTGAGCAAAAATATTTTAATGGAAGTCAGAGAAGTGTTGAGAGGAAGTGAAGGTTCATATCAGGCCAGGATTGAAGGACAACATGACAATGAATTAGTTTTGGAGTACAAAGGAACTCAACTATTAAGATTTTCAACTTGGAAAAACTAA 1638 0.4237 MMQPEDLQSAWPFFEDMNSTFDQGVESYGFTTMYGHVGDCGPYGFTLDDHVGDCGLNTLLSTLEDSTSEICSIPFPFSPIIFPNDHIHIQYPINEETMQLPSLMELDDFDSILDTQIISIQGHGESEGSFFPSQNLSSEVENPWSPTPSVRSELSTNQTSPLTLPQENMEIENQVSLPHLLKAYGEALEQGQKALAEVILRCISQKASPLGESLERLAFYLSQGMANHGDYLKGEAFKNFEAALRALYQGLPIGKIAHFAAVSAILEAMPQDCDVVHIVDFCVGRGVQWPTMIEAVAHMHKTLKLTSIKWGGEGPECVSSPCNFEETRRQLYEQAKSCGLKLKVEEKGVEELVSEIKKMNKRGGRGEFLAFNCMIDLPHMGKVRSRKHALEFLRVAEDLINTSGNRGIITFGDGGAFEKVKNDMNFRSFFDGHLVHYQALLESIESHFPTHFSEARIAMEQLFLQPCISSLDWLQTWEEMIRSGHLEAQINLEGCQLSKNILMEVREVLRGSEGSYQARIEGQHDNELVLEYKGTQLLRFSTWKN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00941 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 159 517 IPR005202 -
Pumo5g00941 545 Coils Coil 342 362 - -
Pumo5g00941 545 ProSiteProfiles GRAS family profile. 168 544 IPR005202 -
Pumo5g00941 545 MobiDBLite consensus disorder prediction 130 161 - -
Pumo5g00941 545 Pfam GRAS domain family 179 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00941 Pumo-Chr5 20140868 20142670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00941 165 471 GRAS Transcription Factor Family AT5G66770 26.791 6.09e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo5g00941 GRAS 4.5e-38 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00941 - - gmx:100784347 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00941 5 20140868 20142670 Pumo5g00941 5 20140868 20142670 ECH