Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00939 ATGATCACTTGCTATCAACCAATGCCTATATCTCTCAGCATTGCTTTATTCTCTAAGCCTCTTATGGCTTCTCCAACTCTTCTTGTCCTCCTCCTATTTCTCCCTCTATTACACCAAGTTGCCTCCAAGACTGTGGTCTTTGAAGGATTTGATGAAAACGGTGAACTCAATCTTGAAGGATCTTCCATCATCAAAACCAGCCGTTTACTTAAACTCACCAACAGATCAACCAATATTGTAGGCCATGCATTCTATGCCACACCCTTCCAAATGCTTCAAAATATTACAAACCAGACACACCAACCCTATGCTTATTCCTTCAGCACCAATTTTGTTTTCTCAATTGTATCCCCAAGTTCTGGCTCTGGGGGCTTTGGCCTTGCCTTCACCATAGCACCCTCAACACAGTTTCCAGGGGCTGAGGCTGGCCATTTTCTTGGCCTTGTTAACTCCACCAATGATGGGAGTGCCTCAAATCACATCTTTGCAGTTGAGTTTGACACAGTAAATGGTTACAAAAGTGCCTCAGACACTGAAGGAAACCATGTTGGGGTCAACATAAATGGCATGGACTCAACTATTACTGAACCAGCTGCATACATTGAAGAAGGTACTGATAATGTAAAGGAAGATTTTAGAATGGCCAGGGAGGATGCTGTCCAAGCTTGGATAGAATTTGATGGTGAAAAGGAAACTCTGAATATAACAATAGCTCCTTTTCCATTACCAAGGCCAAGCAAACCAATTATAGAGAATCATCCAATTAAGCTTAACACTGTTATGAAGGAAAGCATGTATGTTGGTTTCTCAGCATCAACAGGCCAGGAATCAAGCTCTCATTATCTTCTAGGATGGAGTTTTGCAGTGGATGGTGTTGCCCCTCAACTGAATACTTCTAACCTTCCAGAGCCACCTCCAAAGGAGAAAGATCCAACCTCATTTCCTTGGATCAATGTTGCAATTGGCATCTTGTCTGCTTTGACTTTTAGCCTCTTGTGTATTCTATTTTGTCTAACATGTTATAGGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTCAGATACAAAGATCTTAACATAGCCACAAGGGGGTTCATAGAGAGCCAGCTCATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTGTTGCCTTACACAGGAGCTGAGGTTGCTGTCAAGAGGATTGTGAGGAGTCCTTTCCATGGAATGAGGGAGTTTGCAGCTGAGATTGAAAGCTTGGGAAGGTTGAGGCACAAGAATTTGGTGAATCTTCAAGGCTGGTGCAAGAAAAAGAATGATCTGCTCCTAGTCTATGATTTCATTCCAAATGGAAGCCTTGATTATGTCCTATATAACCCCAACAACAACTTTGTTTTGAATTGGGAGCAAAGATTCAACATTCTCAAAGGCATCAGTGCTGGACTATTGTACTTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGATGTGAAAACTAGCAATATTTTGATAGATGGGAACTTGAATGCACGTTTAGGTGACTTTGGACTTGCAAGGCTCTATAACCATGGTCAAGTGTCACACACAACCAATCTGGTTGGCACTATTGGATACATTGCACCAGAGTTAACTCGCACAGGAAAGGCTTCTAAAAGCACAGATGTGTATGCATTTGGGGTTGTGCTCCTTGAAGTGGCAACAGGTAAGAGGCCTCTTGATTCAGATCAGTTTTTCTTGGTGGAGTGGGTTTTTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTGAATTCAGTTTATGATGAGGAAGAAGTTGAGTTGGTTCTCAAGTTGGGTCTACTTTGCACTCAACATAGAGCAAATTATAGACCAACCATGAAACAAGTTACAAGGTACTTAAACTTTGACGACCCTCTTCCTAATATTGCTGATTGGTGGGGACATGGTGTATCAGCTGGGAGCAGTAGATTGAGTTCAGGTTTCTTAGAAGTCACGTCTTCTATGAGAACTGTTGAAACATCAGCGTATTTGTCCTCCATTAGCATGAGCACCAATTCCATAGATGCTGGTAGATAG 2097 0.4239 MITCYQPMPISLSIALFSKPLMASPTLLVLLLFLPLLHQVASKTVVFEGFDENGELNLEGSSIIKTSRLLKLTNRSTNIVGHAFYATPFQMLQNITNQTHQPYAYSFSTNFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHFLGLVNSTNDGSASNHIFAVEFDTVNGYKSASDTEGNHVGVNINGMDSTITEPAAYIEEGTDNVKEDFRMAREDAVQAWIEFDGEKETLNITIAPFPLPRPSKPIIENHPIKLNTVMKESMYVGFSASTGQESSSHYLLGWSFAVDGVAPQLNTSNLPEPPPKEKDPTSFPWINVAIGILSALTFSLLCILFCLTCYRRYMDFEVLEDWEMDCPHRFRYKDLNIATRGFIESQLIGVGGFGAVYKGVLPYTGAEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFIPNGSLDYVLYNPNNNFVLNWEQRFNILKGISAGLLYLHEEWEQVVIHRDVKTSNILIDGNLNARLGDFGLARLYNHGQVSHTTNLVGTIGYIAPELTRTGKASKSTDVYAFGVVLLEVATGKRPLDSDQFFLVEWVFENYHLGQILEVVDPKLNSVYDEEEVELVLKLGLLCTQHRANYRPTMKQVTRYLNFDDPLPNIADWWGHGVSAGSSRLSSGFLEVTSSMRTVETSAYLSSISMSTNSIDAGR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00939 698 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 306 IPR013320 -
Pumo5g00939 698 ProSitePatterns Protein kinases ATP-binding region signature. 379 402 IPR017441 GO:0005524
Pumo5g00939 698 FunFam L-type lectin-domain containing receptor kinase S.4 450 652 - -
Pumo5g00939 698 SMART serkin_6 373 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00939 698 SUPERFAMILY Protein kinase-like (PK-like) 356 644 IPR011009 -
Pumo5g00939 698 ProSiteProfiles Protein kinase domain profile. 373 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00939 698 PANTHER - 38 642 - -
Pumo5g00939 698 FunFam L-type lectin-domain containing receptor kinase V.9 42 292 - -
Pumo5g00939 698 Gene3D Transferase(Phosphotransferase) domain 1 450 650 - -
Pumo5g00939 698 Gene3D Phosphorylase Kinase; domain 1 358 449 - -
Pumo5g00939 698 Gene3D - 44 300 - -
Pumo5g00939 698 FunFam receptor-like protein kinase FERONIA 344 449 - -
Pumo5g00939 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Pumo5g00939 698 Pfam Protein kinase domain 375 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00939 698 CDD STKc_IRAK 379 641 - -
Pumo5g00939 698 Pfam Legume lectin domain 46 302 IPR001220 GO:0030246
Pumo5g00939 698 CDD lectin_legume_LecRK_Arcelin_ConA 46 291 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00939 Pumo-Chr5 20122864 20124960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00939 36 659 Receptor kinase-like Gene Family AT3G08870 48.661 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo5g00939 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00939 - - gmx:100802724 1199.5