Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00936 ATGAGGATGGAAGAGGAGAGACATGGCTCGGAATGTTCCAAGACAAGCCCTTCTAAGGAAGAAGGTTGTGATGAAGAAAGTGAGGGCAATGAAGATGAAAGTAATAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGACAACAGTGAGGCCTTATGTTAGATCCAAGTTTCCAAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTTCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTAGACACAAATCAAGTATTGGCTGATCCTAGGCTTCTTGTAGAAACTGGAGACAGAAATGTTTACAATCTTAGCCAACTTCCCATGCTTCAAGGCTACAATCCAAGCCAAAGTTCAGCATACAGATATGGATATGGGGATGCTTCTCTTGGTATCTATGAACACATGGTGCATAGGCCTTTCATGAATAGGAGTTCATTAGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTGACTGAGAGGACCCATGGGACCAATAGTAACATCAATTGGAGTCATAACATGTTCCAAGTTGATTCTTCTAGTTTTAATGAACCATCAACAACCAAAGTTCATGAACCAAAACATAAGTTCTTCTCATTTGGTGGCAATGAATCCTTATGCACACAAATCAAAATGAGCCAAGTTGATCTACATCAATCAACTCAACTGCAGCCAAGTGCACAAGAGCTCATGCCTAATAATAAGTTGGCTTCAAATCCAGTGGAACTGAAGACCTTGAAAAGGAAGGCTTCAGATGTTGATCTTGATTTGAACCTTTCACTTAAGTTAAATTCAAGAATCAATGCTGAGAACCAAGGAAGCATGGTGGACCATGAAGTTGTTGATAGCAATCTATCACTTTCTTTGTGTTCACAATCCTCCTCCTTTAGCAGCAGCAGGTTGAAAAAATCACAAGATCATTCTAAGGAGCAAAGGGAAATTAGAGCCAGTGCTCTGGATCTGACTATATGA 1104 0.4058 MRMEEERHGSECSKTSPSKEEGCDEESEGNEDESNKQNNNGGSSSNSTVEENEKKTTVRPYVRSKFPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSISHVKSHLQMYRSKKVDTNQVLADPRLLVETGDRNVYNLSQLPMLQGYNPSQSSAYRYGYGDASLGIYEHMVHRPFMNRSSLDESGAEFCGSRLTERTHGTNSNINWSHNMFQVDSSSFNEPSTTKVHEPKHKFFSFGGNESLCTQIKMSQVDLHQSTQLQPSAQELMPNNKLASNPVELKTLKRKASDVDLDLNLSLKLNSRINAENQGSMVDHEVVDSNLSLSLCSQSSSFSSSRLKKSQDHSKEQREIRASALDLTI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00936 367 Gene3D - 67 123 - -
Pumo5g00936 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Pumo5g00936 367 SUPERFAMILY Homeodomain-like 67 121 IPR009057 -
Pumo5g00936 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 44 238 IPR046955 GO:0003700
Pumo5g00936 367 Pfam Myb-like DNA-binding domain 69 119 IPR001005 -
Pumo5g00936 367 MobiDBLite consensus disorder prediction 1 59 - -
Pumo5g00936 367 MobiDBLite consensus disorder prediction 34 51 - -
Pumo5g00936 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 122 IPR006447 GO:0003677
Pumo5g00936 367 FunFam Myb family transcription factor 65 123 - -
Pumo5g00936 367 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00936 Pumo-Chr5 20078670 20080267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00936 14 124 G2-like Transcription Factor Family AT2G42660 56.757 9.26e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g00936 Myb_DNA-binding 7.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00936 - - gmx:102662997 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00936 5 20078670 20080267 Pumo5g00936 5 20078670 20080267 ECH