Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00933 ATGGAGTGCATCATCAACAACCCTACCTCTTGTGAAGGGTCATCATCATCTTCCAAGCACTCCAACAACAAGAGCAATAAGGAGAAAAAGGGTGTGAGGAAAAGCAGCACCAAGGGTGGAGGAGGAGTGAGGCTTTCCACTGATCCACAAAGCGTGGCTGCCAGAGAAAGAAGGCACAGGATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACTGTTTCCATGTTGGAGGGTGCCATTCACTACGTGAAGTTCCTCAAGTCACAGATTTGGCTCCACCAGGCATTGATAGACTTTGTAGATGTTGATCATGAGTCTCCACTGTTCCTCCCCGCAGAATATAATTTCCCTGATGAAGGCACCATTTCCCTTCAGCAAAACCCTTCTTCTTCAGTTTCGGTGCATTCTCATCATCAGCAGAGTTTGCCACAGTTGCCACTGGCACAGTGCTGCTTCCAAGGGGAAGAAGATTATAACACCTTTGATGCCACTATGAAATATTGGCCAGCTTAG 537 0.4804 MECIINNPTSCEGSSSSSKHSNNKSNKEKKGVRKSSTKGGGGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKSQIWLHQALIDFVDVDHESPLFLPAEYNFPDEGTISLQQNPSSSVSVHSHHQQSLPQLPLAQCCFQGEEDYNTFDATMKYWPA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00933 178 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 149 IPR045843 GO:0003700|GO:0006355
Pumo5g00933 178 MobiDBLite consensus disorder prediction 1 21 - -
Pumo5g00933 178 FunFam Transcription factor LAX PANICLE 48 113 - -
Pumo5g00933 178 Gene3D - 50 102 IPR036638 GO:0046983
Pumo5g00933 178 MobiDBLite consensus disorder prediction 1 58 - -
Pumo5g00933 178 Pfam Helix-loop-helix DNA-binding domain 55 94 IPR011598 GO:0046983
Pumo5g00933 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 109 IPR036638 GO:0046983
Pumo5g00933 178 SMART finulus 51 100 IPR011598 GO:0046983
Pumo5g00933 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Pumo5g00933 178 CDD bHLH_AtIND_like 46 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00933 Pumo-Chr5 20041287 20042129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00933 43 120 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.674 3.17e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g00933 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00933 - - gmx:113002129 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00933 5 20041287 20042129 Pumo5g00933 5 20041287 20042129 ECH