Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00928 ATGTCATCGTTTTTGGTGCTTCTCCTATTCTTTGTCTTTGAAACCTGTCATTCGGCCTGTGTTCCTGCTTCTTGTGGCAGCATCCATAACATACGCTACCCTTTCCAGCTAAACGATGATCCAAAACACTGCGATGGTGACTATAGGTACACTTTATCCTGCGAGAACAACCTCACAGTGGTGTACCTAAATTTAATCAAATACTATGTGAAGGCAATCGATTACAGCAACTATACAATCCGAGTGGTAGACCCAAATATTGAGGAGAATAGTTACTCATTTCTTCCTCGTTATTCTTTGGCTGCATTTAACTTCAGTGATTACTATGATTCTATTTCTTCCTATACATATGATCAGACCCGGTCCTATTTATCAAAGAATTCATATTGGTTGCCGAACATACAAAGAAAAACTTACGAACTGTCAAAGCTTGTAACATATTTGAGTACTGAAAGCTCAATAAATTCGTCCAGGTACGTCGAGATTGGCGGGTGCATGAATGATTCGCGGTGGCCATGGGAAAATCAGAAGAAAAGGAGGCTTTATGTTAGTATTGGAGGCAATTATTTAAGGGATTTGAGGCAGATTGAGTTTCGTGTGGAGATGATATACATGACGTCGTGGCCTGGCGCTTTTAAAGATAGCCTAAGCACTTCCTGCTCCGATATTCGAAATGGATTGGAATATGGTGTTGAGCTTTCGTGGCTGAAAGTCTGCACGGACCAGGGTAACAGAAATCGTTTCAGATTCCCACCACTGGTTGAACCCAATAATTTTTGTAGCCTTGCCTCGCCTTACACAGAAGGATCGTTTGATTTTATGAAAAACAGTTTAAGAGATTATTTCCGTGGACTTGTGGAAGGACTATATGAGTTGCGTCATGGCCATGAGTTGCTGACCGCATCTGTCAGTGGTTTTACGGGAACAGCACAATATTACCTAGGACTATACACAGCACGGCATGTTCTTCCACCATACCTTATCTTCAGAATTGTGTCTGGAGTATCATTTGTGATCGGTATTTTCATCACCGTATTTAGTAAAAGGCATTTGTCAACATACGAAGATATTGAAACTTTTCTGCAAGATAACAGCCTTATGCCTATAAGGTACTCTTATTCAGAAATTGTGAATATGACCAAAGGTTTTGAGGATAAGCTGGGTCAAGGGGGATTCGGATCTGTGTACAAAGGAAAGCTACGCAGCGGGCTTTATGCTGCTATAAAGATGTTGGAAAAATCAAATACCAATGGCCAAGATTTTATCAGTGAAGTCGCAACCATTGGAAGGATACACCATGTGAATGTGGTTAGGCTTATTGGATATTGTGTTGAGGGATTAAAGCGTGCACTTGTTTATGAATTCATGCCCTCTGGCTCTCTTGACAAGTATATATTCCCTAAGGAAGAAAGTAGCCTCTTAAGTTATGATCAAATATATCAAATATCCCTTGGAGTGGCCCGTGGGATTGCCTATTTGCATGAAGGGTGTGACATGCAAATTTTACATTTTGATATCAAACCCTACAACATTCTTCTTGATGAAAACTATGTTCCAAAGATTTCAGATTTTGGACTTGCAAAGTTGTATCCGGTAGATGATAGCGTCATCATTTTGACTGCTGCAAGAGGCACAATTGGCTACATGGCTCCAGAATTGTTCTATAAGAATATCGGAGCAGTCTCCTTCAAGGCCGATGTTTACAGCTTTGGAATGTTGTTGATGGAAATGGCGCATAGACAGAAGAATGTGAATCCACATGCAGAAAACTCAAGCCAAGTTTTCTTTCCCACTTGGATTTATGATCAATTTGATAAAGAAGAAGACATAGAATTGGATGATAGCACAGAGGAGGAAAAGAATATAGTAAAGAAGATGATCATAGTTGCGCTATGGTGCATTCAATTAAAACCTTGTGATCGTCCTTCGATGAAAAAAGTAGTAGAGATGCTAGAAGGGGAACTTGATAACCTAGAAATGCCTCCAAAGCCTTTGTTGTATCCAGAAAAAGAGTTTGTTGAGGTTCCAAGAGTCTACTCGGGCCAAACCTCATCAGATGACTTCACAAGTGGAGAAAGTTATTCAGTTGAAGACACTGGGGATATTACACCTGAGAGTTGCCCATGA 2127 0.4034 MSSFLVLLLFFVFETCHSACVPASCGSIHNIRYPFQLNDDPKHCDGDYRYTLSCENNLTVVYLNLIKYYVKAIDYSNYTIRVVDPNIEENSYSFLPRYSLAAFNFSDYYDSISSYTYDQTRSYLSKNSYWLPNIQRKTYELSKLVTYLSTESSINSSRYVEIGGCMNDSRWPWENQKKRRLYVSIGGNYLRDLRQIEFRVEMIYMTSWPGAFKDSLSTSCSDIRNGLEYGVELSWLKVCTDQGNRNRFRFPPLVEPNNFCSLASPYTEGSFDFMKNSLRDYFRGLVEGLYELRHGHELLTASVSGFTGTAQYYLGLYTARHVLPPYLIFRIVSGVSFVIGIFITVFSKRHLSTYEDIETFLQDNSLMPIRYSYSEIVNMTKGFEDKLGQGGFGSVYKGKLRSGLYAAIKMLEKSNTNGQDFISEVATIGRIHHVNVVRLIGYCVEGLKRALVYEFMPSGSLDKYIFPKEESSLLSYDQIYQISLGVARGIAYLHEGCDMQILHFDIKPYNILLDENYVPKISDFGLAKLYPVDDSVIILTAARGTIGYMAPELFYKNIGAVSFKADVYSFGMLLMEMAHRQKNVNPHAENSSQVFFPTWIYDQFDKEEDIELDDSTEEEKNIVKKMIIVALWCIQLKPCDRPSMKKVVEMLEGELDNLEMPPKPLLYPEKEFVEVPRVYSGQTSSDDFTSGESYSVEDTGDITPESCP 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00928 708 SMART serkin_6 381 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00928 708 Pfam Wall-associated receptor kinase galacturonan-binding 20 84 IPR025287 GO:0030247
Pumo5g00928 708 Pfam Protein kinase domain 384 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00928 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Pumo5g00928 708 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Pumo5g00928 708 FunFam PR5-like receptor kinase 456 663 - -
Pumo5g00928 708 FunFam serine/threonine-protein kinase PBS1-like 350 455 - -
Pumo5g00928 708 PANTHER RUST RESISTANCE KINASE LR10-RELATED 353 671 IPR045874 GO:0004672
Pumo5g00928 708 MobiDBLite consensus disorder prediction 681 700 - -
Pumo5g00928 708 Gene3D Phosphorylase Kinase; domain 1 357 455 - -
Pumo5g00928 708 Gene3D Transferase(Phosphotransferase) domain 1 456 664 - -
Pumo5g00928 708 ProSiteProfiles Protein kinase domain profile. 381 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00928 708 MobiDBLite consensus disorder prediction 681 708 - -
Pumo5g00928 708 CDD STKc_IRAK 387 653 - -
Pumo5g00928 708 SUPERFAMILY Protein kinase-like (PK-like) 366 652 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00928 Pumo-Chr5 19755733 19758853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00928 370 673 Receptor kinase-like Gene Family AT5G38280 51.780 1.29e-104 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo5g00928 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00928 - - gmx:100305367 650.973