Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00908 ATGGAGGGTCATCATCTCCATCACCATCATCGGCATCAACAACAACAACATCATCAACAACAGCATCACCACCCTCATCACAACATCACAACTAGTGCCACTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCTGGAGACAAAAGAGTTCCTCGTGATCCGTGCCGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGCTCTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACACGCTATAAGGGATGTGAAACGATGGAGCCGGAAGCTATGAGGCAGCAATTCCCGTTTTACAACGAGCTTCAAGCGATTTTCGAGGCGAGGATGCAGAGAATGCTGTGGGCTGAGGCAGAAGGAGTGTCCAAGAAGAAGGGGGTGCACCTTTCATCAGATGATGAGGAAGAGGGCAATGAAGAGAGCGAGGGAGATCACAAGGGTAACATCAGAAAAAAGAAGAACAAGGGCAAGATGGTAATTGGTGGAGCAAGTGGTAACAACAGTAACTTGGAGAGTTTGAAGGAGATCATGGATGAGTTCATGAGGCAGCAGATGCAAATGGAGGCACAGTGGATGGAGGCATTTGAGGCAAGGGAGAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAACCATGGAGGCATTGGAGAATGAGAGGATAATGATGGACCAGAGATGGAGGGAGAGGGAAGAACAAAGAAGGATTAGAGAGGAAGTTAGGGCTGACAAGAGAGATGCTCTAATCACTGCTCTTCTGAACAAGCTCAGAAGAGAGGAGATGTAG 858 0.486 MEGHHLHHHHRHQQQQHHQQQHHHPHHNITTSATANVDATDRFPQWSILETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFEARMQRMLWAEAEGVSKKKGVHLSSDDEEEGNEESEGDHKGNIRKKKNKGKMVIGGASGNNSNLESLKEIMDEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERIMMDQRWREREEQRRIREEVRADKRDALITALLNKLRREEM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00908 285 Gene3D - 46 107 - -
Pumo5g00908 285 FunFam Zinc finger and SCAN domain-containing 20 46 107 - -
Pumo5g00908 285 CDD GT1 44 109 - -
Pumo5g00908 285 ProSiteProfiles Myb-like domain profile. 46 102 IPR001005 -
Pumo5g00908 285 PANTHER FI21293P1 12 281 - -
Pumo5g00908 285 Coils Coil 194 214 - -
Pumo5g00908 285 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g00908 285 MobiDBLite consensus disorder prediction 149 190 - -
Pumo5g00908 285 MobiDBLite consensus disorder prediction 1 25 - -
Pumo5g00908 285 Pfam Myb/SANT-like DNA-binding domain 45 129 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00908 Pumo-Chr5 18950381 18951839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00908 32 283 Trihelix Transcription Factor Family AT5G01380 52.650 1.15e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g00908 Myb_DNA-bind_4 7.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00908 - - gmx:100778195 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00908 5 18950381 18951839 Pumo5g00908 5 18950381 18951839 ECH