Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00905 ATGGGTTCCAATCGCTCACGTGGCTCTGCCACTGCCAAAGAACGCCTACGTTGGACTCAACAACTCCATGATCGTTTTGTGGAGGCTGTAAATAGCCTTGGGGGCCCTGATAGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGGCTATAGGAGTTTCAGAATTAAACATTTATCACGTCAAAAGCCACCTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGAAAGCTTGAGAAGAGAAGCATATCAGACATACTCCCAAATTTTAGTTCTATATCTGCTCTTCAACTAAAGGAAGTCCTTCAAATGCAGACAGAGATGCAAAATCGCTTGAGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGCTAAAAATTGAAGCACAAGGAAAATACTTGGAGAGAATTGGACAAAGTAATCATCATAGCAAAACAATAATTGGAAAAGCATCAAAGCCTTTTGCTTCAACAATTGCATCCCTGCCTTCACTTTCTGAGGAATCTGAATCTTTGAAAACACAGTCCGAGGAAGAGCATCTATCAGCAGCCAAAAAGCAAAGGATTTCAGAAGAGGGTGTTTTTCCAACAAGTTTTGAACATGCATCATGCACCCCACTAGAATTCTACAACCAAACCTGGAATCTTTCTTGGTGTCAGCTTGAAGCAGCATGCCAATCACCTTTGGTGCCCAGTTTCTTATTATGA 720 0.4153 MGSNRSRGSATAKERLRWTQQLHDRFVEAVNSLGGPDRATPKGILKGMKAIGVSELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSISDILPNFSSISALQLKEVLQMQTEMQNRLSDKTEVQRSLKLKIEAQGKYLERIGQSNHHSKTIIGKASKPFASTIASLPSLSEESESLKTQSEEEHLSAAKKQRISEEGVFPTSFEHASCTPLEFYNQTWNLSWCQLEAACQSPLVPSFLL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00905 239 MobiDBLite consensus disorder prediction 170 191 - -
Pumo5g00905 239 Pfam MYB-CC type transfactor, LHEQLE motif 102 144 IPR025756 -
Pumo5g00905 239 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 184 IPR044848 GO:0003700
Pumo5g00905 239 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Pumo5g00905 239 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Pumo5g00905 239 Gene3D - 12 73 - -
Pumo5g00905 239 FunFam Two-component response regulator 9 73 - -
Pumo5g00905 239 MobiDBLite consensus disorder prediction 175 191 - -
Pumo5g00905 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00905 Pumo-Chr5 18868456 18872709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00905 3 141 G2-like Transcription Factor Family AT4G28610 49.655 1.57e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g00905 Myb_CC_LHEQLE 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00905 - - gmx:100527384 301.982