Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00904 ATGGTTTTTCCCTGGTGGCTTTCTCTTCAACTAGAAATTTCTGCAATTGTTAATTGGAAGAGATGTCAATGTATAATACTTCTATTGAATTTCTTTATGTGGTATTTTTGCTCAACATCTGCTGACATATGGTTCCTTCTATTGATGGTTACCTCAATTCTTTATTGCAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAGGACAAGCCAACTGCGGATAGTGGAAGCAAGTCTAGGGGAAGCACCAAGAGATCTAGTGATGGGCAAGTTAAAAGCAATCCAAAGTCTGTAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAATGAAACACTTTGTGGAAGCTGCGGCGGAAATTACAACGCTGATGAGTTTTGGATTTGCTGCGACATCTGCGAGAGGTGGTTCCATGGAAAGTGTGTCAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGTCCATCTTGCAGCCTGAGGCGGGGCAGGCCCTAG 543 0.418 MVFPWWLSLQLEISAIVNWKRCQCIILLLNFFMWYFCSTSADIWFLLLMVTSILYCRKRLFSLINDLPSVFEVVTDRKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKSVDEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00904 180 CDD PHD_AL_plant 126 176 IPR044104 -
Pumo5g00904 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 174 IPR013083 -
Pumo5g00904 180 ProSiteProfiles Zinc finger PHD-type profile. 124 176 IPR019787 -
Pumo5g00904 180 PANTHER CPG BINDING PROTEIN 57 179 IPR045104 GO:0006355|GO:0042393
Pumo5g00904 180 Pfam PHD-finger 127 174 IPR019787 -
Pumo5g00904 180 FunFam PHD finger alfin-like protein 119 175 - -
Pumo5g00904 180 SMART PHD_3 126 174 IPR001965 -
Pumo5g00904 180 MobiDBLite consensus disorder prediction 89 107 - -
Pumo5g00904 180 ProSitePatterns Zinc finger PHD-type signature. 127 173 IPR019786 -
Pumo5g00904 180 SUPERFAMILY FYVE/PHD zinc finger 115 178 IPR011011 -
Pumo5g00904 180 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00904 Pumo-Chr5 18864505 18865845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00904 57 179 Alfin-like Transcription Factor Family AT5G05610 74.194 1.06e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pumo5g00904 PHD 5.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00904 K26274 - gmx:100782478 247.284